These must be installed prior to installation of CalPred server and
the users must conform to licenses of these softwares before using them.
Installation Steps:
Step 1: Uncompress the downloaded CalPred server by
using any of the freely avaliable programs such as Winrar / Winzip into
"yourfolder"
Step 2: Download the microweb server that comes under
non-redistributable license and unzip it.
Step 3 : Now in the CalPred server folder there will
be two sub - folders "cgi-bin" and "htdocs", copy
the contents of these folders into the same respective folder in microweb
server.
Step 4 : BLAST-GP is enhanced BLAST, which supports
gaps, developed by the NCBI software group. There is an executable which
is necessary for CalPred i.e. blastgp.exe. Please copy "ncbi.ini"
file, "data" folder and "blastgp.exe" file into
"yourfolder\microweb-1.31\cgi-bin\". Make sure that "ncbi.ini"
points to "data" folder's location i.e. edit second line as
Data="data".
Step 5: Download EMBOSSWIN and install it on you computer.
The EMBOSSWIN is installed by default, in C:/ drive of your computer.
If it does'nt, then change the path of installation to "C:\EMBOSSwin".
If due to any reasons you are unable to do so, then change these enviornmental
variable in "prog.cgi" (in 'yourfolder\microweb-1.31\cgi-bin\')
script:
$ENV{'EMBOSSWIN'}="C:/EMBOSSwin"; to $ENV{'EMBOSSWIN'}="your_path
";
$ENV{'EMBOSS_DATA'}="C:/EMBOSSwin/data"; to $ENV{'EMBOSS_DATA'}="your_path/data";
$ENV{'Path'}="C:/EMBOSSwin"; to $ENV{'Path'}="your_path";
Copy "pepstats.exe" from "your_path " to "yourfolder\microweb-1.31\cgi-bin\".
Step 6 : Download SVMlight from its home
page (freely available for non-commercial use) and place "svm_classify.exe"
into "yourfolder\microweb-1.31\cgi-bin\" directory. If everything
goes well, your server should be ready for use now. Start the server
using the microweb icon.
Note:
