FASTA BLAST Scan is a program for processing nucleotide sequences alignment made with FASTA and BLAST alignment tools.

FASTA BLAST Scan is released under the GNU General Public License (GPL)
If you find it useful, please send me a nice postcard.

 FASTA BLAST Scan's features


FASTA BLAST Scan can process two types of nucleotide alignment:

FASTA BLAST Scan is compatible with the following versions of FASTA and BLAST:

FASTA program from "Pearson package" at (versions 3.1, 3.2, 3.3t07 and 3.4t10)

BLASTN from NCBI server ( (version 2.2.25+)

The maximum number of sequences in alignment is 10000.


The selected sequences can be saved in:

Multi-sequence FASTA format that can be directly aligned with the CLUSTALW program

Query anchored format

FASTA_BLAST Scan screenshot


The current version is 2.4

FASTA BLAST Scan for Microsoft-Windows (zip file - (376 Kb))
md5sum: 71869d025445d427ff5d10bbf382ff36
FASTA BLAST Scan for Microsoft-Windows (auto-install file - (619 Kb))
md5sum: 986e5fdd1af0de01e2e0b1bdb1a6ac75
Sources of FASTA BLAST Scan (zip file - (27 Kb))
md5sum: 4adefcb8b4dd9d00ff88e031155af248

To install FASTA BLAST Scan for Microsoft-Windows, extract the files from the ZIP archive.
To run FASTA BLAST Scan, click twice the "fasta_blast_scan-2.4.exe" file.

 System's requirement

FASTA BLAST Scan for Microsoft Windows runs under Windows 95/98/98SE/ME/NT4/2000/XP/2003/7/2008


For any bug report, comment or suggestion: e2 e2 e2 e2

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