BLASTN 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1055567833-016505-4269 Query= (26 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or phase 0, 1 or 2 HTGS sequences) 1,800,290 sequences; 8,446,153,730 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1055567833-016505-4269
Query= (26 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or phase 0, 1 or 2 HTGS sequences) 1,800,290 sequences; 8,446,153,730 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|31581502|gb|AY291315.1| SARS coronavirus Frankfurt 1, co... 52 1e-05 gi|31416306|gb|AY279354.2| SARS coronavirus BJ04, complete ... 52 1e-05 gi|31416305|gb|AY278490.3| SARS coronavirus BJ03, complete ... 52 1e-05 gi|31416290|gb|AY278489.2| SARS coronavirus GZ01, complete ... 52 1e-05 gi|31416292|gb|AY278487.3| SARS coronavirus BJ02, complete ... 52 1e-05 gi|30027610|gb|AY278554.2| SARS coronavirus CUHK-W1, comple... 52 1e-05 gi|30910859|gb|AY297028.1| SARS coronavirus ZJ01, complete ... 52 1e-05 gi|30909287|gb|AY286402.1| SARS coronavirus Taiwan JC-2003 ... 52 1e-05 gi|30248028|gb|AY274119.3| SARS coronavirus TOR2, complete ... 52 1e-05 gi|30698326|gb|AY291451.1| SARS coronavirus TW1, complete g... 52 1e-05 gi|30523247|gb|AY271716.1| SARS coronavirus Tor2 RNA polyme... 52 1e-05 gi|30468046|gb|AY283798.1| SARS coronavirus isolate SIN2774... 52 1e-05 gi|30468045|gb|AY283797.1| SARS coronavirus isolate SIN2748... 52 1e-05 gi|30468044|gb|AY283796.1| SARS coronavirus isolate SIN2679... 52 1e-05 gi|30468043|gb|AY283795.1| SARS coronavirus isolate SIN2677... 52 1e-05 gi|30468042|gb|AY283794.1| SARS coronavirus isolate SIN2500... 52 1e-05 gi|30421451|gb|AY282752.1| SARS coronavirus CUHK-Su10, comp... 52 1e-05 gi|30275666|gb|AY278488.2| SARS coronavirus BJ01, complete ... 52 1e-05 gi|30027617|gb|AY278741.1| SARS coronavirus Urbani, complet... 52 1e-05 gi|30026016|gb|AY268049.1| SARS coronavirus Taiwan RNA-dire... 52 1e-05 gi|30023963|gb|AY278491.2| SARS coronavirus HKU-39849, comp... 52 1e-05 gi|30013621|gb|AY269391.1| SARS coronavirus Vietnam strain ... 52 1e-05 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|31581502|gb|AY291315.1| SARS coronavirus Frankfurt 1, co... 52 1e-05 gi|31416306|gb|AY279354.2| SARS coronavirus BJ04, complete ... 52 1e-05 gi|31416305|gb|AY278490.3| SARS coronavirus BJ03, complete ... 52 1e-05 gi|31416290|gb|AY278489.2| SARS coronavirus GZ01, complete ... 52 1e-05 gi|31416292|gb|AY278487.3| SARS coronavirus BJ02, complete ... 52 1e-05 gi|30027610|gb|AY278554.2| SARS coronavirus CUHK-W1, comple... 52 1e-05 gi|30910859|gb|AY297028.1| SARS coronavirus ZJ01, complete ... 52 1e-05 gi|30909287|gb|AY286402.1| SARS coronavirus Taiwan JC-2003 ... 52 1e-05 gi|30248028|gb|AY274119.3| SARS coronavirus TOR2, complete ... 52 1e-05 gi|30698326|gb|AY291451.1| SARS coronavirus TW1, complete g... 52 1e-05 gi|30523247|gb|AY271716.1| SARS coronavirus Tor2 RNA polyme... 52 1e-05 gi|30468046|gb|AY283798.1| SARS coronavirus isolate SIN2774... 52 1e-05 gi|30468045|gb|AY283797.1| SARS coronavirus isolate SIN2748... 52 1e-05 gi|30468044|gb|AY283796.1| SARS coronavirus isolate SIN2679... 52 1e-05 gi|30468043|gb|AY283795.1| SARS coronavirus isolate SIN2677... 52 1e-05 gi|30468042|gb|AY283794.1| SARS coronavirus isolate SIN2500... 52 1e-05 gi|30421451|gb|AY282752.1| SARS coronavirus CUHK-Su10, comp... 52 1e-05 gi|30275666|gb|AY278488.2| SARS coronavirus BJ01, complete ... 52 1e-05 gi|30027617|gb|AY278741.1| SARS coronavirus Urbani, complet... 52 1e-05 gi|30026016|gb|AY268049.1| SARS coronavirus Taiwan RNA-dire... 52 1e-05 gi|30023963|gb|AY278491.2| SARS coronavirus HKU-39849, comp... 52 1e-05 gi|30013621|gb|AY269391.1| SARS coronavirus Vietnam strain ... 52 1e-05
>gi|31581502|gb|AY291315.1| SARS coronavirus Frankfurt 1, complete genome Length = 29727 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15318 caccgtttctacaggttagctaacga 15343
>gi|31416306|gb|AY279354.2| SARS coronavirus BJ04, complete genome Length = 29732 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|31416305|gb|AY278490.3| SARS coronavirus BJ03, complete genome Length = 29740 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15314 caccgtttctacaggttagctaacga 15339
>gi|31416290|gb|AY278489.2| SARS coronavirus GZ01, complete genome Length = 29757 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|31416292|gb|AY278487.3| SARS coronavirus BJ02, complete genome Length = 29745 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15318 caccgtttctacaggttagctaacga 15343
>gi|30027610|gb|AY278554.2| SARS coronavirus CUHK-W1, complete genome Length = 29736 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15303 caccgtttctacaggttagctaacga 15328
>gi|30910859|gb|AY297028.1| SARS coronavirus ZJ01, complete genome Length = 29715 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15309 caccgtttctacaggttagctaacga 15334
>gi|30909287|gb|AY286402.1| SARS coronavirus Taiwan JC-2003 RNA-directed RNA polymerase (pol) gene, partial cds Length = 368 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 69 caccgtttctacaggttagctaacga 94
>gi|30248028|gb|AY274119.3| SARS coronavirus TOR2, complete genome Length = 29751 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15318 caccgtttctacaggttagctaacga 15343
>gi|30698326|gb|AY291451.1| SARS coronavirus TW1, complete genome Length = 29729 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15318 caccgtttctacaggttagctaacga 15343
>gi|30523247|gb|AY271716.1| SARS coronavirus Tor2 RNA polymerase 1b mRNA, partial cds Length = 158 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 80 caccgtttctacaggttagctaacga 105
>gi|30468046|gb|AY283798.1| SARS coronavirus isolate SIN2774 complete genome Length = 29711 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|30468045|gb|AY283797.1| SARS coronavirus isolate SIN2748 complete genome Length = 29706 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|30468044|gb|AY283796.1| SARS coronavirus isolate SIN2679 complete genome Length = 29711 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|30468043|gb|AY283795.1| SARS coronavirus isolate SIN2677 complete genome Length = 29705 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|30468042|gb|AY283794.1| SARS coronavirus isolate SIN2500 complete genome Length = 29711 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15302 caccgtttctacaggttagctaacga 15327
>gi|30421451|gb|AY282752.1| SARS coronavirus CUHK-Su10, complete genome Length = 29736 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15303 caccgtttctacaggttagctaacga 15328
>gi|30275666|gb|AY278488.2| SARS coronavirus BJ01, complete genome Length = 29725 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15299 caccgtttctacaggttagctaacga 15324
>gi|30027617|gb|AY278741.1| SARS coronavirus Urbani, complete genome Length = 29727 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15318 caccgtttctacaggttagctaacga 15343
>gi|30026016|gb|AY268049.1| SARS coronavirus Taiwan RNA-directed RNA polymerase (pol) gene, partial cds Length = 433 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 80 caccgtttctacaggttagctaacga 105
>gi|30023963|gb|AY278491.2| SARS coronavirus HKU-39849, complete genome Length = 29742 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 15318 caccgtttctacaggttagctaacga 15343
>gi|30013621|gb|AY269391.1| SARS coronavirus Vietnam strain 200300592 polymerase gene, partial cds Length = 405 Score = 52.0 bits (26), Expect = 1e-05 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 caccgtttctacaggttagctaacga 26 |||||||||||||||||||||||||| Sbjct: 80 caccgtttctacaggttagctaacga 105
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or phase 0, 1 or 2 HTGS sequences) Posted date: Jun 13, 2003 12:52 AM Number of letters in database: -143,780,858 Number of sequences in database: 1,800,290 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 30,851 Number of Sequences: 1800290 Number of extensions: 30851 Number of successful extensions: 8605 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8583 Number of HSP's gapped (non-prelim): 22 length of query: 26 length of database: 8,446,153,730 effective HSP length: 18 effective length of query: 8 effective length of database: 8,413,748,510 effective search space: 67309988080 effective search space used: 67309988080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 17 (34.2 bits)
