Function and Method Index

BCAminoAcid::aaPropertiesDict	BCNucleotideRNA::objectForSavedRepresentation:
BCAminoAcid::alanine	BCNucleotideRNA::purine
BCAminoAcid::arginine	BCNucleotideRNA::pyrimidine
BCAminoAcid::asparagine	BCNucleotideRNA::strong
BCAminoAcid::asparticacid	BCNucleotideRNA::symbolForChar:
BCAminoAcid::asx	BCNucleotideRNA::undefined
BCAminoAcid::cysteine	BCNucleotideRNA::uridine
BCAminoAcid::gap	BCNucleotideRNA::V
BCAminoAcid::glutamicacid	BCNucleotideRNA::weak
BCAminoAcid::glutamine	BCSequence::addAnnotation:
BCAminoAcid::glx	BCSequence::addAnnotation:forKey:
BCAminoAcid::glycine	BCSequence::annotationForKey:
BCAminoAcid::histidine	BCSequence::annotations
BCAminoAcid::initAminoAcids	BCSequence::bytes
BCAminoAcid::isoleucine	BCSequence::clearSymbolArray
BCAminoAcid::leucine	BCSequence::complement
BCAminoAcid::lysine	BCSequence::containsAmbiguousSymbols
BCAminoAcid::methionine	BCSequence::convertThreeLetterStringToOneLetterString:symbolSet:
BCAminoAcid::objectForSavedRepresentation:	BCSequence::description
BCAminoAcid::phenylalanine	BCSequence::initWithData:symbolSet:
BCAminoAcid::proline	BCSequence::initWithString:
BCAminoAcid::serine	BCSequence::initWithString:range:
BCAminoAcid::symbolForChar:	BCSequence::initWithString:range:symbolSet:
BCAminoAcid::threeLetterCode	BCSequence::initWithString:symbolSet:
BCAminoAcid::threonine	BCSequence::initWithSymbolArray:
BCAminoAcid::tryptophan	BCSequence::initWithSymbolArray:symbolSet:
BCAminoAcid::tyrosine	BCSequence::initWithThreeLetterString:symbolSet:
BCAminoAcid::undefined	BCSequence::insertSymbolsFromSequence:atIndex:
BCAminoAcid::valine	BCSequence::length
BCAnnotation::annotationWithName:boolValue:	BCSequence::objectForSavedRepresentation:
BCAnnotation::annotationWithName:content:	BCSequence::removeSymbolAtIndex:
BCAnnotation::annotationWithName:doubleValue:	BCSequence::removeSymbolsInRange:
BCAnnotation::annotationWithName:floatValue:	BCSequence::reverse
BCAnnotation::annotationWithName:intValue:	BCSequence::reverseComplement
BCAnnotation::boolValue	BCSequence::savableRepresentation
BCAnnotation::content	BCSequence::sequenceData
BCAnnotation::copyWithZone:	BCSequence::sequenceString
BCAnnotation::datatype	BCSequence::sequenceStringFromSymbolArray:
BCAnnotation::description	BCSequence::sequenceType
BCAnnotation::doubleValue	BCSequence::sequenceTypeForData:
BCAnnotation::floatValue	BCSequence::sequenceTypeForString:
BCAnnotation::initWithName:boolValue:	BCSequence::sequenceTypeForSymbolArray:
BCAnnotation::initWithName:content:	BCSequence::sequenceWithString:
BCAnnotation::initWithName:doubleValue:	BCSequence::sequenceWithString:symbolSet:
BCAnnotation::initWithName:floatValue:	BCSequence::sequenceWithSymbolArray:
BCAnnotation::initWithName:intValue:	BCSequence::sequenceWithSymbolArray:symbolSet:
BCAnnotation::intValue	BCSequence::sequenceWithThreeLetterString:symbolSet:
BCAnnotation::isEqualTo:	BCSequence::setSymbolArray:
BCAnnotation::isEqualToAnnotation:	BCSequence::setSymbolArray:
BCAnnotation::name	BCSequence::setSymbolSet:
BCAnnotation::setContent:	BCSequence::subSequenceInRange:
BCAnnotation::setName:	BCSequence::subSequenceStringInRange:
BCAnnotation::sortAnnotationsOnContentAscending:	BCSequence::subSymbolArrayInRange:
BCAnnotation::sortAnnotationsOnContentDescending:	BCSequence::symbolArray
BCAnnotation::sortAnnotationsOnNameAscending:	BCSequence::symbolAtIndex:
BCAnnotation::sortAnnotationsOnNameDescending:	BCSequence::symbolSet
BCAnnotation::stringValue	BCSequenceAlignment(AlignmentAnnotation)::annotationForKey:
BCCodon::aminoAcidSymbolString	BCSequenceAlignment(AlignmentQuerying)::alignmentInRange:
BCCodon::codedAminoAcid	BCSequenceAlignment(AlignmentQuerying)::length
BCCodon::copyWithZone:	BCSequenceAlignment(AlignmentQuerying)::sequenceAtIndex:
BCCodon::description	BCSequenceAlignment(AlignmentQuerying)::symbolSet
BCCodon::tripletString	BCSequenceAlignment(AlignmentQuerying)::symbolsForColumnAtIndex:
BCCodonDNA::initWithDNASequenceString:andAminoAcidString:	BCSequenceAlignment(PairwiseAlignment)::needlemanWunschAlignmentWithSequences:properties:
BCCodonDNA::matchesTriplet:	BCSequenceAlignment(PairwiseAlignment)::smithWatermanAlignmentWithSequences:properties:
BCCodonDNA::triplet	BCSequenceCodon::convertRangeToOriginalSequence:
BCCodonDNA::unmatched	BCSequenceCodon::initWithCodonArray:
BCCodonRNA::initWithRNASequenceString:andAminoAcidString:	BCSequenceCodon::initWithCodonArray:geneticCode:frame:
BCCodonRNA::matchesTriplet:	BCSequenceCodon::initWithString:skippingUnknownSymbols:
BCCodonRNA::triplet	BCSequenceCodon::longestOpenReadingFrame
BCCodonRNA::unmatched	BCSequenceCodon::longestOpenReadingFrameUsingStartCodon:
BCNucleotideDNA::adenosine	BCSequenceCodon::openReadingFramesLongerThanCutoff:
BCNucleotideDNA::amino	BCSequenceCodon::openReadingFramesLongerThanCutoff:usingStartCodon:
BCNucleotideDNA::anyBase	BCSequenceCodon::readingFrame
BCNucleotideDNA::B	BCSequenceCodon::sequenceWithCodonArray:
BCNucleotideDNA::customBase:	BCSequenceCodon::translationOfRange:
BCNucleotideDNA::cytidine	BCSequenceCodon::translationOfRange:usingStartCodon:
BCNucleotideDNA::D	BCSequenceCodon::translationsLongerThanCutoff:
BCNucleotideDNA::gap	BCSequenceCodon::translationsLongerThanCutoff:usingStartCodon:
BCNucleotideDNA::guanidine	BCSequenceCodon::usedCode
BCNucleotideDNA::H	BCSymbol::averageMass
BCNucleotideDNA::initBases	BCSymbol::description
BCNucleotideDNA::initWithSymbolChar:	BCSymbol::initializeSymbolRelationships
BCNucleotideDNA::isBase	BCSymbol::initWithSymbolChar:
BCNucleotideDNA::keto	BCSymbol::isCompoundSymbol
BCNucleotideDNA::objectForSavedRepresentation:	BCSymbol::isRepresentedBySymbol:
BCNucleotideDNA::purine	BCSymbol::massUsingType:
BCNucleotideDNA::pyrimidine	BCSymbol::maxMassUsingType:
BCNucleotideDNA::strong	BCSymbol::minMassUsingType:
BCNucleotideDNA::symbolForChar:	BCSymbol::monoisotopicMass
BCNucleotideDNA::thymidine	BCSymbol::name
BCNucleotideDNA::undefined	BCSymbol::representedSymbols
BCNucleotideDNA::V	BCSymbol::representingSymbols
BCNucleotideDNA::weak	BCSymbol::representsSymbol:
BCNucleotideRNA::adenosine	BCSymbol::savableRepresentation
BCNucleotideRNA::amino	BCSymbol::setAverageMass:
BCNucleotideRNA::anyBase	BCSymbol::setMonoisotopicMass:
BCNucleotideRNA::B	BCSymbol::setValue:forKey:
BCNucleotideRNA::customBase:	BCSymbol::symbolChar
BCNucleotideRNA::cytidine	BCSymbol::symbolInfo
BCNucleotideRNA::D	BCSymbol::symbolSetOfRepresentedSymbols
BCNucleotideRNA::gap	BCSymbol::symbolSetOfRepresentingSymbols
BCNucleotideRNA::guanidine	BCSymbol::symbolString
BCNucleotideRNA::H	BCSymbol::valueForKey:
BCNucleotideRNA::initBases	BCSymbolSet::initWithArray:
BCNucleotideRNA::initWithSymbolChar:	BCSymbolSet::initWithArray:sequenceType:
BCNucleotideRNA::isBase	BCSymbolSet::initWithString:sequenceType:
BCNucleotideRNA::keto