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Module: AlignInfo Bio/Align/AlignInfo.py

Extract information from alignment objects.

In order to try and avoid huge alignment objects with tons of functions, functions which return summary type information about alignments should be put into classes in this module.

classes: o SummaryInfo o PSSM

Functions   
print_info_content
  print_info_content 
print_info_content (
        summary_info,
        fout=sys.stdout,
        rep_record=0,
        )

Three column output: position, aa in representative sequence, ic_vector value

Classes   
PSSM

Represent a position specific score matrix.

SummaryInfo

Calculate summary info about the alignment.


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This document was automatically generated on Sat Jul 7 09:49:45 2001 by HappyDoc version r1_5