Module: FastaAlign

Bio/Fasta/FastaAlign.py

FastaAlign.py

Code to deal with alignments written in Fasta format. This mostly just uses the regular Fasta parsing stuff written by Jeff to deal with all of the input and output formats.

functions: o parse_file()

classes: FastaAlignment

Functions

parse_file

parse_file ( file_name,  type='DNA' )

Parse the given file into a FastaAlignment object.

Arguments: o file_name - The location of the file to parse. o type - The type of information contained in the file.

Exceptions
Exceptions	ValueError( "Invalid type %s passed. Need DNA, RNA or PROTEIN" % type )

Classes

FastaAlignment

Work with the Fasta Alignment format.

Table of Contents

This document was automatically generated on Sat Jul 7 09:49:49 2001 by HappyDoc version r1_5