_is_completely_disordered ( self,  residue )

Return 1 if all atoms in the residue have a non blanc altloc.

get_structure ( self )

Return the structure.

init_atom (
        self,
        name,
        coord,
        b_factor,
        occupancy,
        altloc,
        fullname,
        )

Initiate a new Atom object.

Arguments: o name - string, atom name, e.g. CA, spaces should be stripped o coord - Numpy array (Float0, size 3), atomic coordinates o b_factor - float, B factor o occupancy - float o altloc - string, alternative location specifier o fullname - string, atom name including spaces, e.g. " CA "

init_chain ( self,  chain_id )

Initiate a new Chain object with given id.

Arguments: o chain_id - string

init_model ( self,  model_id )

Initiate a new Model object with given id.

Arguments: o id - int

init_residue (
        self,
        resname,
        field,
        resseq,
        icode,
        )

Initiate a new Residue object.

Arguments: o resname - string, e.g. "ASN" o field - hetero flag, "W" for waters, "H_" followed by the residue name for hetero residues (e.g. "H_FUC"), default blanc. o resseq - int, sequence identifier o icode - string, insertion code

init_seg ( self,  segid )

Flag a change in segid.

Arguments: o segid - string

init_structure ( self,  structure_id )

Initiate a new Structure object with given id.

Arguments: o id - string

set_anisou ( self,  anisou_array )

Set anisotropic B factor of current Atom.

set_line_counter ( self,  line_counter )

The line counter keeps track of the line in the PDB file that is being parsed.

Arguments: o line_counter - int

set_sigatm ( self,  sigatm_array )

Set standard deviation of atom position of current Atom.

set_siguij ( self,  siguij_array )

Set standard deviation of anisotropic B factor of current Atom.