Number of paralogs in run 1: 2 Number of paralogs in run 2: 3 Run 1 is choosen ------------ CLUSTER ----------- bacteria3_01 bacteria4_01 bacteria1_01 bacteria2_01 ------------ FAMILY ------------ bacteria1_01 bacteria2_01 bacteria3_01 bacteria4_01 COMPLETE: 4 ------------ CLUSTER ----------- bacteria1_02 bacteria1_03 bacteria2_02 bacteria3_02 bacteria3_03 ------------ FAMILY ------------ bacteria1_02 bacteria2_02 bacteria3_02 INCOMPLETE: 3 >>>>> IN-PARALOGS ----------- bacteria1_03 <<<<< OUT-OF_CLUSTER PARALOGS ----------- bacteria3_03