Revision 419 - Directory Listing
Modified Thu Nov 22 14:09:18 2007 UTC (17 years, 3 months ago) by duarte

Re-branching for JUNG2 development

Revision 416 - Directory Listing
Modified Thu Nov 22 11:18:28 2007 UTC (17 years, 3 months ago) by lpetzo
Original Path: trunk/sadp

- changed the identation mode
- added some comments

Revision 386 - Directory Listing
Modified Wed Nov 7 17:35:26 2007 UTC (17 years, 3 months ago) by lpetzo
Original Path: trunk/sadp

MODIFICATIONS
-------------

class SADP:
- added exception handling stuff for exceptions thrown by class Alignment

Revision 371 - Directory Listing
Modified Thu Oct 25 15:33:49 2007 UTC (17 years, 4 months ago) by lpetzo
Original Path: trunk/sadp

Class ContactMap:
- Exception ContactMapConstructionError is thrown if the construction of a contact map from a Graph object fails.
- changed method to determine the number of nodes of a graph object.
- changed method to iterate through the set of edges of the graph (though the previous version seemed to be much more efficient ...)

Class SADP:
- added some new members controlling to input order of the contact maps (preservedInputOrder)
- the progress status of the run() method is send to a Retriever object
- added getters and setter for all data member.
- implemented methods to compute the sequence alignment and the node matching
- a couple of changes in method main

Revision 370 - Directory Listing
Modified Thu Oct 25 15:19:22 2007 UTC (17 years, 4 months ago) by lpetzo
Original Path: trunk/sadp

to be thrown if the construction of a contact map from a proteinstructure.Graph instance fails

Revision 316 - Directory Listing
Added Thu Sep 13 08:47:55 2007 UTC (17 years, 5 months ago) by lpetzo
Original Path: trunk/sadp

initial version of sadp