 ../
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TinkerError.java
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419
(16 years ago)
by duarte:
Re-branching for JUNG2 development
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PRMInfo.java
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419
(16 years ago)
by duarte:
Re-branching for JUNG2 development
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ConstraintsMaker.java
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441
(16 years ago)
by duarte:
Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial)
New methods getChains() and getModels() in all Pdb classes
New Exception PdbLoadError
New tester for getChains and getModels: testGetChains
Changed all calls to Pdb construction accordingly (includes changing excpetions)
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TinkerRunner.java
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474
(16 years ago)
by duarte:
Moved max cluster methods from SimilarityGraph to MaxClusterRunner. Removed SimilarityGraph
Now MaxClusterRunner can do all modes of maxcluster: ranking, matrix, and pairwise
Changed default for DEFAULT_FORCE_CONSTANT in TinkerRunner to 10.0
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