 ../
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Contact.java
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123
(17 years ago)
by duarte:
Initial commit of the proteinstructure package. Contains classes to use pdb protein structures
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PdbaseInconsistencyError.java
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124
(17 years ago)
by duarte:
Added error handling for PdbaseInfo: 2 new exception classes
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PdbaseAcCodeNotFoundError.java
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124
(17 years ago)
by duarte:
Added error handling for PdbaseInfo: 2 new exception classes
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AA.java
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126
(17 years ago)
by duarte:
MYSQLUSER now taken from unix name with new getUserName method
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EdgeState.java
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128
(17 years ago)
by duarte:
ContactMap and EdgeState classes moved here from CMPredict repository
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MsdsdAcCodeNotFoundError.java
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130
(17 years ago)
by duarte:
NEW FEATURE: reading pdb data from msdsd
New classes MsdsdInfo and its exception classes
FIXED BUG in dump2pdbfile in Pdb: was not sorting the atom lines
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MsdsdInconsistentResidueNumbersError.java
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130
(17 years ago)
by duarte:
NEW FEATURE: reading pdb data from msdsd
New classes MsdsdInfo and its exception classes
FIXED BUG in dump2pdbfile in Pdb: was not sorting the atom lines
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ContactMap.java
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131
(17 years ago)
by duarte:
2 new convenience methods: getBoolMatrix and getIntMatrix
Got rid of method to print constraint equations, was useless
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MsdsdInfo.java
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133
(17 years ago)
by duarte:
New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
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PdbaseInfo.java
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133
(17 years ago)
by duarte:
New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
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Pdb.java
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133
(17 years ago)
by duarte:
New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
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Graph.java
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134
(17 years ago)
by duarte:
Implemented basic reading contacts from file
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