Links to HEAD: | (view) (annotate) |
Sticky Revision: | |
Sort logs by: |
NEW TYPES --------- - FileFormatError - FastaFileFormatError - PirFileFormatError - AlignmentConstructionError MODIFICATIONS ------------- class Alignment: - introduced new exceptions to be throw whenever file format error have been detected or any other construction errors occur - changed accession rules of function getGapCharacter from "public" to "public static" - new functions: * writeFasta class CiffileFormatError: - changed super class from Exception to the new FileFormatError class class GraphFileFormatError: - s. class CiffileFormatError class PairwiseAlignmentConverter: - added exception handling features due to class Alignment class PairwiseAlignmentGraphConverter: - s. class PairwiseAlignmentConverter class PdbFileFormatError: - s. class CifffileFormatError
FIXED BUGS: - directed was not set when reading from cm file - pdbChainCode not set when reading from db given pdbCode - filling pdbresser2resser and resser2pdbresser hashmaps also in reading from pdb file - using "A" as chainCode when reading from pdb file - some error handling for file formats: new exception classes GraphFileFormatError and PdbfileFormatError
This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, enter a numeric revision.