Revision 172 - (view) (annotate) - [select for diffs]
Modified Fri May 25 13:41:19 2007 UTC (17 years, 4 months ago) by duarte
File length: 6594 byte(s)
Diff to previous 136

Got rid of some unnecessary warnings

Revision 136 - (view) (annotate) - [select for diffs]
Modified Mon May 14 14:50:44 2007 UTC (17 years, 4 months ago) by duarte
File length: 6650 byte(s)
Diff to previous 135

FIXED BUG: pdb data load from msdsd wasn't working for NULL chaincodes

Revision 135 - (view) (annotate) - [select for diffs]
Modified Mon May 14 09:49:04 2007 UTC (17 years, 4 months ago) by duarte
File length: 6653 byte(s)
Diff to previous 133

NEW FUNCTIONALITY: reading of graph from db is fully implemented for all cases

New chain member variable in the Info classes, read in get_asym_id (Pdbase) and in get_chain_id (Msdsd)
Reading chain also in Pdb in read_pdb_data_from_file
Not reading chain anymore in read_atomData of PdbaseInfo
Added oneletter2threeletter and getoneletter2threeletter to AA class
Changes in Graph:
- added db static vars and getUserName method
- new member variables graphid and sm_id
- new method read_graph_from_db to read contacts, nodes (and sequence from nodes) from db
- new method getgraphid
New Exception class GraphIdNotFoundError

Revision 133 - (view) (annotate) - [select for diffs]
Modified Fri May 11 09:37:38 2007 UTC (17 years, 4 months ago) by duarte
File length: 6531 byte(s)
Diff to previous 130

New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!

Revision 130 - (view) (annotate) - [select for diffs]
Added Thu May 10 15:52:24 2007 UTC (17 years, 4 months ago) by duarte
File length: 6464 byte(s)

NEW FEATURE: reading pdb data from msdsd
New classes MsdsdInfo and its exception classes
FIXED BUG in dump2pdbfile in Pdb: was not sorting the atom lines