Revision 193 - (view) (annotate) - [select for diffs]
Modified Wed Jun 13 07:57:31 2007 UTC (17 years, 8 months ago) by duarte
File length: 1569 byte(s)
Diff to previous 186

Moved motif static methods to Background class. They didn't belong here

Revision 186 - (view) (annotate) - [select for diffs]
Modified Thu Jun 7 10:42:13 2007 UTC (17 years, 8 months ago) by duarte
File length: 3827 byte(s)
Diff to previous 182

FIXED BUG: The returned regex in motif2regex was wrong, needed a ".*" at the beginning

Revision 182 - (view) (annotate) - [select for diffs]
Modified Tue Jun 5 13:41:05 2007 UTC (17 years, 8 months ago) by duarte
File length: 3825 byte(s)
Diff to previous 181

FIXED BUG: the switch statement was missing the breaks
This was causing strange behaviour in counts NodeBackground getSize methods and also was making them being too slow

Revision 181 - (view) (annotate) - [select for diffs]
Modified Tue Jun 5 12:27:49 2007 UTC (17 years, 8 months ago) by duarte
File length: 3754 byte(s)
Diff to previous 179

New class NbhProbDistribution
In NodeNbh implemented a few static classes to convert between different motifs and to match motifs using differing criteria

Revision 179 - (view) (annotate) - [select for diffs]
Added Thu May 31 09:41:41 2007 UTC (17 years, 8 months ago) by duarte
File length: 1420 byte(s)

FIXED BUG: fixed restrictContactsToMax/MinRange. Couldn't delete contacts at the same time as looping in them
NEW CLASSES NodeNbh and EdgeNbh, now used in getNodeNbh and getEdgeNbh
New method getResidueType