Revision 406 - (view) (annotate) - [select for diffs]
Modified Tue Nov 20 16:50:32 2007 UTC (16 years, 10 months ago) by duarte
File length: 10743 byte(s)
Diff to previous 405

Reverting to last revision, changes made in 405 were wrong

Revision 405 - (view) (annotate) - [select for diffs]
Modified Tue Nov 20 16:37:54 2007 UTC (16 years, 10 months ago) by duarte
File length: 10827 byte(s)
Diff to previous 385

Alignment and PairwiseAlignmentConverter now using Interval, IntervalSet and TreeSet<Integer> to replace Edge, EdgeSet and NodeSet
New class IntervalSet

Revision 385 - (view) (annotate) - [select for diffs]
Modified Wed Nov 7 17:32:43 2007 UTC (16 years, 10 months ago) by lpetzo
File length: 10743 byte(s)
Diff to previous 372

NEW TYPES
---------
- FileFormatError
- FastaFileFormatError
- PirFileFormatError
- AlignmentConstructionError

MODIFICATIONS
-------------
class Alignment:
- introduced new exceptions to be throw whenever file format error have been detected or any other construction errors occur
- changed accession rules of function getGapCharacter from "public" to "public static"
- new functions:
 * writeFasta
 
class CiffileFormatError:
- changed super class from Exception to the new FileFormatError class

class GraphFileFormatError:
- s. class CiffileFormatError

class PairwiseAlignmentConverter:
- added exception handling features due to class Alignment

class PairwiseAlignmentGraphConverter:
- s. class PairwiseAlignmentConverter

class PdbFileFormatError:
- s. class CifffileFormatError

Revision 372 - (view) (annotate) - [select for diffs]
Added Wed Oct 31 10:20:22 2007 UTC (16 years, 11 months ago) by lpetzo
File length: 10369 byte(s)