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renamed precision to accuracy (in accordance with Casp)
Graph,PredEval: added fields coverage and title to predEval (and evalPrediction) GraphAverager: added method to return average graph (with weighted edges) PdbfilePdb: fixed bug when reading from Casp prediction files
Added GraphAverager class and PredEval class. GraphAverager copied from HomologyPredictor (in CMPredict): doing the averaging correctly now Added method evaluatePrediction to Graph Some refactoring in Alignment and better javadocs
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