Revision 492 - (view) (annotate) - [select for diffs]
Modified Wed Jan 2 13:18:57 2008 UTC (16 years, 8 months ago) by duarte
File length: 6363 byte(s)
Copied from: branches/aglappe-jung/rewriteNBHood.java revision 491
Diff to previous 419

Copied the aglappe-jung branch into trunk.

Revision 419 - (view) (annotate) - [select for diffs]
Modified Thu Nov 22 14:09:18 2007 UTC (16 years, 10 months ago) by duarte
Original Path: branches/aglappe-jung/rewriteNBHood.java
File length: 6363 byte(s)
Diff to previous 299

Re-branching for JUNG2 development

Revision 299 - (view) (annotate) - [select for diffs]
Modified Wed Aug 22 14:55:21 2007 UTC (17 years, 1 month ago) by lappe
File length: 6363 byte(s)
Diff to previous 295

only one out of both BB/SC insertion per moves based
on sc/bb domin. out of temp shell

Revision 295 - (view) (annotate) - [select for diffs]
Modified Tue Aug 21 08:45:59 2007 UTC (17 years, 1 month ago) by lappe
File length: 6363 byte(s)
Diff to previous 292

Cleaned up and debugged version (sc/bb were xchanged)   

Revision 292 - (view) (annotate) - [select for diffs]
Modified Mon Aug 20 12:09:13 2007 UTC (17 years, 1 month ago) by lappe
File length: 5507 byte(s)
Diff to previous 290

2nd version using  cull_pdb and denoting BB domin. contacts in nbhoodstring as z(helix), b(strand) and o(other) 

Revision 290 - (view) (annotate) - [select for diffs]
Added Mon Aug 20 09:21:59 2007 UTC (17 years, 1 month ago) by lappe
File length: 5972 byte(s)

1st version scoring with pdb_reps_graph_4_2 and full nbhood string