 ../
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BlastError.java
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577
(16 years ago)
by duarte:
New package sequence. Initial commit of classes to run blast and parse its output.
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BlastTabularParser.java
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577
(16 years ago)
by duarte:
New package sequence. Initial commit of classes to run blast and parse its output.
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BlastHit.java
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589
(16 years ago)
by duarte:
New classes Template, TemplateList to be used in homology modelling pipeline.
Modified BlastUtils to use TemplateList class
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BlastHitList.java
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589
(16 years ago)
by duarte:
New classes Template, TemplateList to be used in homology modelling pipeline.
Modified BlastUtils to use TemplateList class
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PsipredError.java
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590
(16 years ago)
by duarte:
Added code to run psipred.
Fixed a few minor bugs.
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PsipredRunner.java
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590
(16 years ago)
by duarte:
Added code to run psipred.
Fixed a few minor bugs.
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BlastRunner.java
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593
(16 years ago)
by stehr:
merged in some changes (now writing similarity matrix in blast utils)
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BlastUtils.java
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593
(16 years ago)
by stehr:
merged in some changes (now writing similarity matrix in blast utils)
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Sequence.java
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597
(16 years ago)
by duarte:
Fixed the fasta header regex to take only first token of header as sequence name (same behaviour as in Alignment class)
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