Revision 1009 - (view) (annotate) - [select for diffs]
Modified Wed Mar 31 15:50:04 2010 UTC (14 years, 6 months ago) by hstehr
File length: 4260 byte(s)
Diff to previous 1005

refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features

Revision 1005 - (view) (annotate) - [select for diffs]
Modified Wed Mar 31 12:29:26 2010 UTC (14 years, 6 months ago) by hstehr
File length: 4242 byte(s)
Diff to previous 951

refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core

Revision 951 - (view) (annotate) - [select for diffs]
Modified Fri Jan 29 16:12:34 2010 UTC (14 years, 8 months ago) by duarte
File length: 4237 byte(s)
Copied from: trunk/pairwiseSeqId.java revision 949
Diff to previous 815

Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars. 
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.

Revision 815 - (view) (annotate) - [select for diffs]
Modified Thu Dec 18 13:41:37 2008 UTC (15 years, 9 months ago) by stehr
Original Path: trunk/pairwiseSeqId.java
File length: 4237 byte(s)
Diff to previous 774

new executables for pairwise all-against-all sequence alignments (pairwiseSeqId) and for calculating surface accessibilities and writing them to the b-factor column

Revision 774 - (view) (annotate) - [select for diffs]
Modified Sat Oct 4 20:13:39 2008 UTC (15 years, 11 months ago) by stehr
Original Path: trunk/pairwiseSeqId.java
File length: 4064 byte(s)
Diff to previous 773

updated output of pairwiseSeqId

Revision 773 - (view) (annotate) - [select for diffs]
Added Sat Oct 4 15:32:25 2008 UTC (15 years, 11 months ago) by stehr
Original Path: trunk/pairwiseSeqId.java
File length: 3784 byte(s)

calculate the pairwise identity for a set of sequences