owl/trunk/testPdb.java

import java.io.IOException;

import proteinstructure.Graph;
import proteinstructure.Pdb;
import proteinstructure.PdbaseAcCodeNotFoundError;
import proteinstructure.PdbaseInconsistencyError;
public class testPdb {

        /**
         * Test class for classes in aglappe.proteinstructure package (Pdb, Graph, AA, Contact) 
         * Loads structure data from db and calculates graph dumping contacts to file
         */
        
        public static void main(String[] args) throws IOException, PdbaseInconsistencyError, PdbaseAcCodeNotFoundError{
                System.out.println("loading structure");
                Pdb pdb = new Pdb("1bxy","A");
                System.out.println("getting graph");
                Graph graph = pdb.get_graph("Ca", 8.0);
                System.out.println("dumping contacts to file");
                graph.write_contacts_to_file("test.txt");
                

        }

}
Revision:	125
Committed:	Wed May 9 11:58:59 2007 UTC (17 years, 4 months ago) by duarte
File size:	769 byte(s)
Log Message:	Initial commit of testPdb, to test the proteinstructure package
Line	User	Rev	File contents
1	duarte	125	import java.io.IOException;
2
3			import proteinstructure.Graph;
4			import proteinstructure.Pdb;
5			import proteinstructure.PdbaseAcCodeNotFoundError;
6			import proteinstructure.PdbaseInconsistencyError;
7			public class testPdb {
8
9			/**
10			* Test class for classes in aglappe.proteinstructure package (Pdb, Graph, AA, Contact)
11			* Loads structure data from db and calculates graph dumping contacts to file
12			*/
13
14			public static void main(String[] args) throws IOException, PdbaseInconsistencyError, PdbaseAcCodeNotFoundError{
15			System.out.println("loading structure");
16			Pdb pdb = new Pdb("1bxy","A");
17			System.out.println("getting graph");
18			Graph graph = pdb.get_graph("Ca", 8.0);
19			System.out.println("dumping contacts to file");
20			graph.write_contacts_to_file("test.txt");
21
22
23			}
24
25			}