owl/trunk/testResidueSelectionString.java

import proteinstructure.NodeSet;

/**
 * Program to test parsing of a residue selection string (e.g. 1-3,5,7-8)
 */
public class testResidueSelectionString {
        
        public static void main(String[] args) {

                String[] tp = {"1","10","10,1","10-9","10-10,5","1,6-7,8-9"};
                String[] tn = {"", "-",",","1,1,","1,-2","10-9-7",",4","4--5","1.5","1,,2"," "};
                int fp = 0, fn = 0;

                System.out.println("Positives:");
                for(String selStr:tp) {
                        System.out.print(selStr + "\t\t");
                        if(NodeSet.isValidSelectionString(selStr)) {
                                System.out.println("ok");
                        } else {
                                System.out.println("error");
                                fn++;
                        }
                }
                System.out.println("Negatives:");
                for(String selStr:tn) {
                        System.out.print(selStr + "\t\t");
                        if(!NodeSet.isValidSelectionString(selStr)) {
                                System.out.println("ok");
                        } else {
                                System.out.println("error");
                                fn++;
                        }
                }
                assert(fp == 0);
                assert(fn == 0);
                
                System.out.println("Parsing:");
                for(String selStr:tp) {
                        System.out.print(selStr + "\t\t");
                        NodeSet nodeSet = NodeSet.parseSelectionString(selStr);
                        System.out.println(nodeSet);
                }
        }

}
Revision:	419
Committed:	Thu Nov 22 14:09:18 2007 UTC (16 years, 11 months ago) by duarte
Original Path:	*branches/aglappe-jung/testResidueSelectionString.java*
File size:	1098 byte(s)
Log Message:	Re-branching for JUNG2 development
Line	User	Rev	File contents
1	stehr	351	import proteinstructure.NodeSet;
2
3			/**
4			* Program to test parsing of a residue selection string (e.g. 1-3,5,7-8)
5			*/
6			public class testResidueSelectionString {
7
8			public static void main(String[] args) {
9
10			String[] tp = {"1","10","10,1","10-9","10-10,5","1,6-7,8-9"};
11			String[] tn = {"", "-",",","1,1,","1,-2","10-9-7",",4","4--5","1.5","1,,2"," "};
12			int fp = 0, fn = 0;
13
14			System.out.println("Positives:");
15			for(String selStr:tp) {
16			System.out.print(selStr + "\t\t");
17			if(NodeSet.isValidSelectionString(selStr)) {
18			System.out.println("ok");
19			} else {
20			System.out.println("error");
21			fn++;
22			}
23			}
24			System.out.println("Negatives:");
25			for(String selStr:tn) {
26			System.out.print(selStr + "\t\t");
27			if(!NodeSet.isValidSelectionString(selStr)) {
28			System.out.println("ok");
29			} else {
30			System.out.println("error");
31			fn++;
32			}
33			}
34			assert(fp == 0);
35			assert(fn == 0);
36
37			System.out.println("Parsing:");
38			for(String selStr:tp) {
39			System.out.print(selStr + "\t\t");
40			NodeSet nodeSet = NodeSet.parseSelectionString(selStr);
41			System.out.println(nodeSet);
42			}
43			}
44
45			}