COMBOSA3D - Coloring Of Molecules Based On Sequence Alignment

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• COMBOSA3D colors protein structures using sequence alignment information.  It displays the structures using the Chime plugin (version 2.0 or higher), which is currently available for Windows 95/98/NT and Macintosh from MDL Information Systems, Inc.  On other platforms COMBOSA3D can be used with the RasMol visualization program (see the next page for more details).
• Some of the original COMBOSA3D code has been incorporated into Eric Martz's Protein Explorer.  The Protein Explorer version of COMBOSA3D, called MSA3D, offers additional features and a different user interface.  To access MSA3D, go to the Protein Explorer home page and click on the colored molecule in the top left corner.