jsmol/php/jsmol.php Jmol.Info.serverURL PROBLEM: When testing LOCAL FG4.2, this test initially failed. file:///Users/emartz/DOSFiles/D-disk/ERICS1WS/jmol/fgij/fg.htm?mol= https://proteopedia.org/wiki/images/d/d5/M12L24-single-polyhedron.pdb Failure was because local FG4.2 was setting serverURL to an obsolete jsmol.php (from FG4.1, on PPDA). N.B. jsmol.php FILES: >>>>>>>>> 16.2.1 jsmol.php is DIFFERENT from 16.1.41fixed in FG 4.1 <<<<<<<<<<<<<<<<< CONCLUSIONS: 1. LOCAL FGiJ: serverURL is not required for https from RCSB, but is for https from either proteopedia.org or bioinformatics.org. 2. BI.O: JSmol 16.2.1 in FG4.2 on BI.O with PHP=16.2.1 can get PDB from either BI.O or PPDA. And WORKS also for XYZ and main_chains test files below. 3. LOCAL FGiJ 4.2 with serverURL=16.2.1 jsmol.php (on BI.O) gets PDB from either BI.O or PPDA. PROBLEM SOLVED! And WORKS also for XYZ and main_chains test files below. SERVER TEST FILES: PDB format w/ ORIG, SCALE not CRYST1 load https://proteopedia.org/wiki/images/d/d5/M12L24-single-polyhedron.pdb load https://bioinformatics.org/molvis/pdb/M12L24-single-polyhedron.pdb XYZ format load https://proteopedia.org/wiki/images/b/ba/M24l48-single-polyhedron.pdb (or bi.o molvis) PDB format w/ CRYST1, SCALE not ORIG load https://proteopedia.org/wiki/images/a/ad/M24L48_main_chains.pdb (or bi.o molvis) ---- TESTS --------------------------- FGiJ 4.1 JSmol16.1.41fixed ("16.1.39") @ Bioinformatics.Org: serverURL commented out, 1ijw works SLOWLY. (But is it using stolaf by default?) With serverURL set to bi.o, 1ijw works FAST. (16.1.41fixed* using jsmol.php of 14.32.69) * JSmol version I was using with 4.2 in November, 2023. Those 2 versions of JSmol have identical jsmol.php filed. >>>>>>>>> 16.2.1 jsmol.php is DIFFERENT from 16.1.41fixed <<<<<<<<<<<<<<<<< LOCAL FGiJ: serverURL commented out. 1ijw WORKS. load https://files.rcsb.org/download/4mdh.pdb WORKS load test single-polyhedron from ppda FAILS, error connecting to your.server.here + EOFEx Ditto load from bi.o FAILS with xsmol.php xsmol.php (non-existent file): 1ijw WORKS. load https://files.rcsb.org/download/4mdh.pdb WORKS load test single-polyhedron from ppda FAILS, error connecting and EOFException. Ditto load from bi.o FAILS with xsmol.php Jmol.Info.serverURL is used by JSmol when on a SERVER? BUT if commented out, JSmol still gets models from RCSB. BI.O 4.2 JSmol16.2.1: M12L24-single-polyhedron.pdb from BI.O with php=16.2.1 WORKS M12L24-single-polyhedron.pdb from PPDA with php=16.2.1 WORKS