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MS(nsam,theta,segs) either -s or -t or -T option must be used. either -s or -t or -T option must be used. Too few command line arguments First argument error. nsam <= 0. Second argument error. howmany <= 0. with -r option must specify both rec_rate and nsites>1 with -c option must specify both f and track_len>0 mfreq must be >= 2 and <= nsam/2. not enough arguments after %s -t theta (this option and/or the next must be used. Theta = 4*N0*u ) -s segsites ( fixed number of segregating sites) -T (Output gene tree.) -F minfreq Output only sites with freq of minor allele >= minfreq. -r rho nsites (rho here is 4Nc) -c f track_len (f = ratio of conversion rate to rec rate. tracklen is mean length.) if rho = 0., f = 4*N0*g, with g the gene conversion rate. -G alpha ( N(t) = N0*exp(-alpha*t) . alpha = -log(Np/Nr)/t -I npop n1 n2 ... [mig_rate] (all elements of mig matrix set to mig_rate/(npop-1) -m i j m_ij (i,j-th element of mig matrix set to m_ij.) -ma m_11 m_12 m_13 m_21 m_22 m_23 ...(Assign values to elements of migration matrix.) -n i size_i (popi has size set to size_i*N0 -g i alpha_i (If used must appear after -M option.) The following options modify parameters at the time 't' specified as the first argument: -eG t alpha (Modify growth rate of all pop's.) -eg t i alpha_i (Modify growth rate of pop i.) -eM t mig_rate (Modify the mig matrix so all elements are mig_rate/(npop-1) -em t i j m_ij (i,j-th element of mig matrix set to m_ij at time t ) -ema t npop m_11 m_12 m_13 m_21 m_22 m_23 ...(Assign values to elements of migration matrix.) -eN t size (Modify pop sizes. New sizes = size*N0 ) -en t i size_i (Modify pop size of pop i. New size of popi = size_i*N0 .) -es t i proportion (Split: pop i -> pop-i + pop-npop, npop increases by 1. proportion is probability that each lineage stays in pop-i. (p, 1-p are admixt. proport. Size of pop npop is set to N0 and alpha = 0.0 , size and alpha of pop i are unchanged. -ej t i j ( Join lineages in pop i and pop j into pop j size, alpha and M are unchanged. -f filename ( Read command line arguments from file filename.) See msdoc.pdf for explanation of these parameters. Too many output argumentsnsam should >2.%s // segsites: %d prob: %g positions: %6.4lf endmalloc error. gensam.2realloc error. biggeralloc error in cmatrixalloc error in cmatric. 2 sum sample sizes != nsam argument should be -%s ? no parameter file %s %sMust use -I option first. Not enough arg's after -G. Not enough arg's after -eG. Not enough arg's after -eg. e event option default For usage type: ms usage: ms nsam howmany Options: %d:%5.3lf(,); ):%5.3lf@?>@?3${>M9I8f0;ˬˬmalloc error. segtremalloc error. segtre_migmalloc error. segtre_mig.c 2malloc error. segtre.calloc error. se1calloc error. se2malloc error. segtre2 alloc error. re1 realloc error. re2calloc error. re3.alloc error.ca1 realloc error. ca1 Infinite coalescent time. No migration. infinite time to next event. Negative growth rate in last time interval or non-communicating subpops. realloc error. 1. segtre_mig.crealloc error. 2. segtre_mig.cJsD> %d MATLAB R13 nativeHRb DW<  lz oooTooo`y  * : J Z j z  * : J Z j z X{`{h{p{x{DyH{|{{{{{P{GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20)GCC: (GNU) 3.2.3 20030502 (Red Hat Linux 3.2.3-20).symtab.strtab.shstrtab.hash.dynsym.dynstr.gnu.version.gnu.version_d.gnu.version_r.rel.dyn.rel.plt.init.text.fini.rodata.eh_frame.data.dynamic.ctors.dtors.jcr.got.bss.comment! <<)1ov>o8MoTT\ e   n i t JzDWDW`W`W 8i8i