GOBP(Gene Ontology Biological Process) Classes included in AtREA

GO class ID
Class Description
Number of genes in the GOBP class (in affy 22k dataset)
GO:0000038 very-long-chain fatty acid metabolic process 14
GO:0000059 protein import into nucleus, docking 12
GO:0000103 sulfate assimilation 13
GO:0000160 two-component signal transduction system 16
GO:0000162 tryptophan biosynthetic process 22
GO:0000226 microtubule cytoskeleton organization and biogenesis 14
GO:0000271 polysaccharide biosynthetic process 18
GO:0000398 nuclear mRNA splicing, via spliceosome 24
GO:0000724 double-strand break repair via homologous recombination 8
GO:0000902 cell morphogenesis 8
GO:0000910 cytokinesis 15
GO:0001666 response to hypoxia 13
GO:0002237 response to molecule of bacterial origin 8
GO:0005513 detection of calcium ion 8
GO:0005975 carbohydrate metabolic process 307
GO:0005983 starch catabolic process 11
GO:0005986 sucrose biosynthetic process 21
GO:0005990 lactose catabolic process 18
GO:0005992 trehalose biosynthetic process 20
GO:0006012 galactose metabolic process 15
GO:0006014 D-ribose metabolic process 11
GO:0006071 glycerol metabolic process 15
GO:0006073 glucan metabolic process 26
GO:0006075 1,3-beta-glucan biosynthetic process 11
GO:0006094 gluconeogenesis 10
GO:0006096 glycolysis 54
GO:0006098 pentose-phosphate shunt 18
GO:0006099 tricarboxylic acid cycle 11
GO:0006108 malate metabolic process 12
GO:0006114 glycerol biosynthetic process 15
GO:0006118 electron transport 474
GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 17
GO:0006259 DNA metabolic process 14
GO:0006260 DNA replication 38
GO:0006265 DNA topological change 15
GO:0006281 DNA repair 63
GO:0006284 base-excision repair 13
GO:0006298 mismatch repair 13
GO:0006306 DNA methylation 16
GO:0006310 DNA recombination 16
GO:0006333 chromatin assembly or disassembly 14
GO:0006334 nucleosome assembly 54
GO:0006342 chromatin silencing 8
GO:0006349 genetic imprinting 9
GO:0006350 transcription 50
GO:0006352 transcription initiation 27
GO:0006355 regulation of transcription, DNA-dependent 762
GO:0006364 rRNA processing 15
GO:0006396 RNA processing 67
GO:0006397 mRNA processing 19
GO:0006412 translation 316
GO:0006413 translational initiation 57
GO:0006414 translational elongation 28
GO:0006415 translational termination 12
GO:0006418 tRNA aminoacylation for protein translation 24
GO:0006446 regulation of translational initiation 8
GO:0006457 protein folding 201
GO:0006461 protein complex assembly 11
GO:0006464 protein modification process 55
GO:0006468 protein amino acid phosphorylation 858
GO:0006470 protein amino acid dephosphorylation 39
GO:0006486 protein amino acid glycosylation 32
GO:0006487 protein amino acid N-linked glycosylation 11
GO:0006499 N-terminal protein myristoylation 364
GO:0006506 GPI anchor biosynthetic process 8
GO:0006508 proteolysis 379
GO:0006510 ATP-dependent proteolysis 23
GO:0006511 ubiquitin-dependent protein catabolic process 202
GO:0006512 ubiquitin cycle 47
GO:0006520 amino acid metabolic process 23
GO:0006526 arginine biosynthetic process 9
GO:0006605 protein targeting 10
GO:0006606 protein import into nucleus 8
GO:0006623 protein targeting to vacuole 15
GO:0006626 protein targeting to mitochondrion 16
GO:0006629 lipid metabolic process 150
GO:0006631 fatty acid metabolic process 13
GO:0006633 fatty acid biosynthetic process 56
GO:0006635 fatty acid beta-oxidation 23
GO:0006725 aromatic compound metabolic process 46
GO:0006730 one-carbon compound metabolic process 14
GO:0006779 porphyrin biosynthetic process 17
GO:0006790 sulfur metabolic process 13
GO:0006800 oxygen and reactive oxygen species metabolic process 14
GO:0006807 nitrogen compound metabolic process 16
GO:0006808 regulation of nitrogen utilization 14
GO:0006810 transport 364
GO:0006811 ion transport 15
GO:0006812 cation transport 83
GO:0006813 potassium ion transport 43
GO:0006814 sodium ion transport 19
GO:0006816 calcium ion transport 16
GO:0006817 phosphate transport 12
GO:0006820 anion transport 17
GO:0006825 copper ion transport 11
GO:0006826 iron ion transport 10
GO:0006829 zinc ion transport 11
GO:0006839 mitochondrial transport 42
GO:0006855 multidrug transport 50
GO:0006857 oligopeptide transport 63
GO:0006863 purine transport 12
GO:0006865 amino acid transport 48
GO:0006869 lipid transport 85
GO:0006874 cellular calcium ion homeostasis 21
GO:0006875 cellular metal ion homeostasis 8
GO:0006879 cellular iron ion homeostasis 9
GO:0006886 intracellular protein transport 107
GO:0006888 ER to Golgi vesicle-mediated transport 16
GO:0006891 intra-Golgi vesicle-mediated transport 14
GO:0006904 vesicle docking during exocytosis 27
GO:0006913 nucleocytoplasmic transport 13
GO:0006914 autophagy 19
GO:0006915 apoptosis 15
GO:0006944 membrane fusion 31
GO:0006949 syncytium formation 10
GO:0006950 response to stress 81
GO:0006952 defense response 336
GO:0006970 response to osmotic stress 51
GO:0006974 response to DNA damage stimulus 9
GO:0006979 response to oxidative stress 150
GO:0007010 cytoskeleton organization and biogenesis 19
GO:0007015 actin filament organization 8
GO:0007017 microtubule-based process 17
GO:0007018 microtubule-based movement 53
GO:0007031 peroxisome organization and biogenesis 14
GO:0007049 cell cycle 20
GO:0007059 chromosome segregation 8
GO:0007126 meiosis 8
GO:0007131 meiotic recombination 9
GO:0007155 cell adhesion 25
GO:0007165 signal transduction 209
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway 129
GO:0007186 G-protein coupled receptor protein signaling pathway 10
GO:0007205 activation of protein kinase C 10
GO:0007242 intracellular signaling cascade 47
GO:0007264 small GTPase mediated signal transduction 68
GO:0007267 cell-cell signaling 18
GO:0007275 multicellular organismal development 127
GO:0007389 pattern specification process 10
GO:0007568 aging 43
GO:0007623 circadian rhythm 27
GO:0008033 tRNA processing 21
GO:0008152 metabolic process 484
GO:0008202 steroid metabolic process 13
GO:0008219 cell death 28
GO:0008272 sulfate transport 12
GO:0008283 cell proliferation 21
GO:0008299 isoprenoid biosynthetic process 20
GO:0008380 RNA splicing 26
GO:0008610 lipid biosynthetic process 8
GO:0008643 carbohydrate transport 42
GO:0008654 phospholipid biosynthetic process 24
GO:0009051 pentose-phosphate shunt, oxidative branch 11
GO:0009052 pentose-phosphate shunt, non-oxidative branch 8
GO:0009058 biosynthetic process 89
GO:0009061 anaerobic respiration 14
GO:0009073 aromatic amino acid family biosynthetic process 14
GO:0009089 lysine biosynthetic process via diaminopimelate 11
GO:0009116 nucleoside metabolic process 8
GO:0009117 nucleotide metabolic process 17
GO:0009218 pyrimidine ribonucleotide metabolic process 8
GO:0009225 nucleotide-sugar metabolic process 19
GO:0009231 riboflavin biosynthetic process 10
GO:0009266 response to temperature stimulus 12
GO:0009269 response to desiccation 17
GO:0009294 DNA mediated transformation 25
GO:0009306 protein secretion 12
GO:0009407 toxin catabolic process 44
GO:0009408 response to heat 89
GO:0009409 response to cold 168
GO:0009411 response to UV 19
GO:0009414 response to water deprivation 101
GO:0009415 response to water 9
GO:0009416 response to light stimulus 92
GO:0009451 RNA modification 11
GO:0009553 embryo sac development 18
GO:0009555 pollen development 16
GO:0009556 microsporogenesis 15
GO:0009561 megagametogenesis 13
GO:0009567 double fertilization forming a zygote and endosperm 21
GO:0009585 red, far-red light phototransduction 11
GO:0009607 response to biotic stimulus 34
GO:0009611 response to wounding 77
GO:0009612 response to mechanical stimulus 8
GO:0009615 response to virus 16
GO:0009617 response to bacterium 47
GO:0009620 response to fungus 20
GO:0009624 response to nematode 50
GO:0009626 plant-type hypersensitive response 26
GO:0009627 systemic acquired resistance 16
GO:0009630 gravitropism 13
GO:0009631 cold acclimation 18
GO:0009637 response to blue light 10
GO:0009638 phototropism 12
GO:0009639 response to red or far red light 31
GO:0009640 photomorphogenesis 31
GO:0009644 response to high light intensity 30
GO:0009651 response to salt stress 158
GO:0009653 anatomical structure morphogenesis 9
GO:0009658 chloroplast organization and biogenesis 28
GO:0009664 cellulose and pectin-containing cell wall organization and biogenesis 30
GO:0009686 gibberellin biosynthetic process 19
GO:0009688 abscisic acid biosynthetic process 12
GO:0009691 cytokinin biosynthetic process 10
GO:0009693 ethylene biosynthetic process 15
GO:0009695 jasmonic acid biosynthetic process 20
GO:0009698 phenylpropanoid metabolic process 10
GO:0009699 phenylpropanoid biosynthetic process 10
GO:0009723 response to ethylene stimulus 90
GO:0009725 response to hormone stimulus 8
GO:0009733 response to auxin stimulus 214
GO:0009734 auxin mediated signaling pathway 19
GO:0009735 response to cytokinin stimulus 40
GO:0009736 cytokinin mediated signaling 34
GO:0009737 response to abscisic acid stimulus 164
GO:0009738 abscisic acid mediated signaling 35
GO:0009739 response to gibberellin stimulus 76
GO:0009740 gibberellic acid mediated signaling 22
GO:0009741 response to brassinosteroid stimulus 13
GO:0009742 brassinosteroid mediated signaling 9
GO:0009744 response to sucrose stimulus 32
GO:0009749 response to glucose stimulus 10
GO:0009751 response to salicylic acid stimulus 88
GO:0009753 response to jasmonic acid stimulus 107
GO:0009788 negative regulation of abscisic acid mediated signaling 12
GO:0009789 positive regulation of abscisic acid mediated signaling 9
GO:0009790 embryonic development 22
GO:0009793 embryonic development ending in seed dormancy 284
GO:0009807 lignan biosynthetic process 13
GO:0009809 lignin biosynthetic process 32
GO:0009813 flavonoid biosynthetic process 27
GO:0009814 defense response, incompatible interaction 8
GO:0009816 defense response to bacterium, incompatible interaction 20
GO:0009817 defense response to fungus, incompatible interaction 13
GO:0009821 alkaloid biosynthetic process 12
GO:0009825 multidimensional cell growth 16
GO:0009826 unidimensional cell growth 78
GO:0009828 cellulose and pectin-containing cell wall loosening 32
GO:0009831 cellulose and pectin-containing cell wall modification during multidimensional cell growth 23
GO:0009832 cellulose and pectin-containing cell wall biogenesis 25
GO:0009834 cellulose and pectin-containing secondary cell wall biogenesis 13
GO:0009845 seed germination 25
GO:0009850 auxin metabolic process 8
GO:0009851 auxin biosynthetic process 8
GO:0009853 photorespiration 29
GO:0009860 pollen tube growth 20
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 8
GO:0009867 jasmonic acid mediated signaling pathway 18
GO:0009870 defense response signaling pathway, resistance gene-dependent 11
GO:0009873 ethylene mediated signaling pathway 34
GO:0009887 organ morphogenesis 17
GO:0009908 flower development 51
GO:0009909 regulation of flower development 23
GO:0009910 negative regulation of flower development 30
GO:0009911 positive regulation of flower development 24
GO:0009926 auxin polar transport 36
GO:0009933 meristem organization 11
GO:0009934 regulation of meristem organization 12
GO:0009944 polarity specification of adaxial/abaxial axis 16
GO:0009960 endosperm development 13
GO:0009965 leaf morphogenesis 28
GO:0009972 cytidine deamination 8
GO:0010014 meristem initiation 8
GO:0010017 red or far red light signaling pathway 18
GO:0010020 chloroplast fission 8
GO:0010025 wax biosynthetic process 9
GO:0010026 trichome differentiation 13
GO:0010027 thylakoid membrane organization and biogenesis 8
GO:0010029 regulation of seed germination 8
GO:0010039 response to iron ion 9
GO:0010048 vernalization response 13
GO:0010051 xylem and phloem pattern formation 13
GO:0010072 primary shoot apical meristem specification 10
GO:0010075 regulation of meristem growth 8
GO:0010087 phloem or xylem histogenesis 10
GO:0010090 trichome morphogenesis 18
GO:0010091 trichome branching 11
GO:0010093 specification of floral organ identity 8
GO:0010102 lateral root morphogenesis 11
GO:0010103 stomatal complex morphogenesis 8
GO:0010105 negative regulation of ethylene mediated signaling pathway 11
GO:0010114 response to red light 27
GO:0010118 stomatal movement 11
GO:0010119 regulation of stomatal movement 23
GO:0010150 leaf senescence 15
GO:0010154 fruit development 10
GO:0010167 response to nitrate 9
GO:0010182 sugar mediated signaling 18
GO:0010193 response to ozone 11
GO:0010197 polar nucleus fusion 14
GO:0010200 response to chitin 8
GO:0010218 response to far red light 21
GO:0010224 response to UV-B 24
GO:0010252 auxin homeostasis 10
GO:0010267 RNA interference, production of ta-siRNAs 10
GO:0010286 heat acclimation 12
GO:0015031 protein transport 100
GO:0015691 cadmium ion transport 8
GO:0015979 photosynthesis 42
GO:0015986 ATP synthesis coupled proton transport 30
GO:0015992 proton transport 27
GO:0015995 chlorophyll biosynthetic process 24
GO:0016036 cellular response to phosphate starvation 16
GO:0016043 cellular component organization and biogenesis 15
GO:0016049 cell growth 17
GO:0016051 carbohydrate biosynthetic process 48
GO:0016071 mRNA metabolic process 22
GO:0016117 carotenoid biosynthetic process 14
GO:0016126 sterol biosynthetic process 22
GO:0016132 brassinosteroid biosynthetic process 10
GO:0016192 vesicle-mediated transport 29
GO:0016226 iron-sulfur cluster assembly 14
GO:0016310 phosphorylation 22
GO:0016311 dephosphorylation 13
GO:0016441 posttranscriptional gene silencing 8
GO:0016481 negative regulation of transcription 21
GO:0016567 protein ubiquitination 71
GO:0016568 chromatin modification 10
GO:0016571 histone methylation 10
GO:0016575 histone deacetylation 11
GO:0016998 cell wall catabolic process 21
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 10
GO:0019252 starch biosynthetic process 8
GO:0019253 reductive pentose-phosphate cycle 11
GO:0019344 cysteine biosynthetic process 9
GO:0019430 removal of superoxide radicals 9
GO:0019513 lactose catabolic process, using glucoside 3-dehydrogenase 13
GO:0019515 lactose catabolic process via UDP-galactose 14
GO:0019538 protein metabolic process 13
GO:0019575 sucrose catabolic process, using beta-fructofuranosidase 17
GO:0019654 acetate fermentation 15
GO:0019656 glucose catabolic process to D-lactate and ethanol 9
GO:0019658 glucose catabolic process to lactate and acetate 11
GO:0019684 photosynthesis, light reaction 9
GO:0019722 calcium-mediated signaling 11
GO:0019745 pentacyclic triterpenoid biosynthetic process 11
GO:0019761 glucosinolate biosynthetic process 14
GO:0019853 L-ascorbic acid biosynthetic process 9
GO:0019915 sequestering of lipid 14
GO:0019953 sexual reproduction 13
GO:0030001 metal ion transport 67
GO:0030036 actin cytoskeleton organization and biogenesis 26
GO:0030048 actin filament-based movement 16
GO:0030154 cell differentiation 18
GO:0030163 protein catabolic process 23
GO:0030244 cellulose biosynthetic process 24
GO:0031347 regulation of defense response 9
GO:0031348 negative regulation of defense response 11
GO:0032313 regulation of Rab GTPase activity 19
GO:0040007 growth 8
GO:0040029 regulation of gene expression, epigenetic 11
GO:0042023 DNA endoreduplication 12
GO:0042254 ribosome biogenesis and assembly 94
GO:0042335 cuticle development 14
GO:0042538 hyperosmotic salinity response 31
GO:0042542 response to hydrogen peroxide 27
GO:0042545 cell wall modification 60
GO:0042546 cell wall biogenesis 12
GO:0042742 defense response to bacterium 48
GO:0042752 regulation of circadian rhythm 11
GO:0043087 regulation of GTPase activity 12
GO:0044237 cellular metabolic process 17
GO:0044267 cellular protein metabolic process 17
GO:0045036 protein targeting to chloroplast 9
GO:0045045 secretory pathway 9
GO:0045449 regulation of transcription 537
GO:0045454 cell redox homeostasis 58
GO:0045941 positive regulation of transcription 25
GO:0046686 response to cadmium ion 47
GO:0046777 protein amino acid autophosphorylation 12
GO:0048235 pollen sperm cell differentiation 9
GO:0048316 seed development 14
GO:0048364 root development 38
GO:0048366 leaf development 59
GO:0048367 shoot development 15
GO:0048440 carpel development 14
GO:0048441 petal development 10
GO:0048443 stamen development 12
GO:0048481 ovule development 25
GO:0048507 meristem development 9
GO:0048510 regulation of timing of transition from vegetative to reproductive phase 12
GO:0048527 lateral root development 12
GO:0048573 photoperiodism, flowering 10
GO:0048765 root hair cell differentiation 10
GO:0048767 root hair elongation 8
GO:0048825 cotyledon development 10
GO:0050832 defense response to fungus 49
GO:0051276 chromosome organization and biogenesis 44
GO:0051301 cell division 14
GO:0051607 defense response to virus 10
GO:0051707 response to other organism 50
GO:0051726 regulation of cell cycle 61