GOCC (Gene Ontology Cellular Component) Classes included in AtREA

GO class ID	Class Description	Number of genes in the GOCC class (in affy 22k dataset)
GO:0000139	Golgi membrane	8
GO:0000145	exocyst	25
GO:0000148	1,3-beta-glucan synthase complex	11
GO:0000151	ubiquitin ligase complex	69
GO:0000159	protein phosphatase type 2A complex	14
GO:0000325	vacuole, cell cycle independent morphology	8
GO:0000785	chromatin	16
GO:0000786	nucleosome	50
GO:0000815	ESCRT III complex	8
GO:0005576	extracellular region	85
GO:0005618	cell wall	61
GO:0005622	intracellular	441
GO:0005634	nucleus	1789
GO:0005635	nuclear envelope	15
GO:0005643	nuclear pore	26
GO:0005654	nucleoplasm	11
GO:0005667	transcription factor complex	13
GO:0005681	spliceosome	11
GO:0005694	chromosome	15
GO:0005730	nucleolus	54
GO:0005732	small nucleolar ribonucleoprotein complex	26
GO:0005737	cytoplasm	421
GO:0005739	mitochondrion	765
GO:0005740	mitochondrial envelope	14
GO:0005741	mitochondrial outer membrane	16
GO:0005743	mitochondrial inner membrane	75
GO:0005744	mitochondrial inner membrane presequence translocase complex	20
GO:0005758	mitochondrial intermembrane space	8
GO:0005759	mitochondrial matrix	29
GO:0005768	endosome	9
GO:0005773	vacuole	19
GO:0005774	vacuolar membrane	37
GO:0005777	peroxisome	40
GO:0005778	peroxisomal membrane	17
GO:0005783	endoplasmic reticulum	246
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	11
GO:0005789	endoplasmic reticulum membrane	21
GO:0005792	microsome	18
GO:0005794	Golgi apparatus	114
GO:0005795	Golgi stack	16
GO:0005802	trans-Golgi network	12
GO:0005819	spindle	20
GO:0005829	cytosol	145
GO:0005834	heterotrimeric G-protein complex	56
GO:0005839	proteasome core complex	22
GO:0005840	ribosome	208
GO:0005852	eukaryotic translation initiation factor 3 complex	9
GO:0005856	cytoskeleton	12
GO:0005874	microtubule	16
GO:0005875	microtubule associated complex	58
GO:0005886	plasma membrane	240
GO:0005887	integral to plasma membrane	17
GO:0008180	signalosome	13
GO:0008287	protein serine/threonine phosphatase complex	24
GO:0008540	proteasome regulatory particle, base subcomplex	11
GO:0008541	proteasome regulatory particle, lid subcomplex	11
GO:0009341	beta-galactosidase complex	17
GO:0009504	cell plate	10
GO:0009505	cellulose and pectin-containing cell wall	170
GO:0009507	chloroplast	1541
GO:0009508	plastid chromosome	16
GO:0009524	phragmoplast	34
GO:0009534	chloroplast thylakoid	11
GO:0009535	chloroplast thylakoid membrane	220
GO:0009536	plastid	125
GO:0009538	photosystem I reaction center	8
GO:0009543	chloroplast thylakoid lumen	69
GO:0009570	chloroplast stroma	62
GO:0009579	thylakoid	9
GO:0009654	oxygen evolving complex	11
GO:0009705	membrane of vacuole with cell cycle-independent morphology	33
GO:0009706	chloroplast inner membrane	31
GO:0009707	chloroplast outer membrane	19
GO:0009941	chloroplast envelope	32
GO:0009986	cell surface	9
GO:0010005	cortical microtubule, transverse to long axis	8
GO:0010287	plastoglobule	54
GO:0010319	stromule	30
GO:0012505	endomembrane system	2936
GO:0015629	actin cytoskeleton	9
GO:0015934	large ribosomal subunit	38
GO:0015935	small ribosomal subunit	12
GO:0016020	membrane	1088
GO:0016021	integral to membrane	339
GO:0016459	myosin complex	19
GO:0016469	proton-transporting two-sector ATPase complex	25
GO:0016602	CCAAT-binding factor complex	12
GO:0016607	nuclear speck	16
GO:0019005	SCF ubiquitin ligase complex	25
GO:0022625	cytosolic large ribosomal subunit	13
GO:0022626	cytosolic ribosome	80
GO:0022627	cytosolic small ribosomal subunit	52
GO:0030076	light-harvesting complex	15
GO:0030095	chloroplast photosystem II	18
GO:0030125	clathrin vesicle coat	18
GO:0030126	COPI vesicle coat	8
GO:0030127	COPII vesicle coat	10
GO:0030529	ribonucleoprotein complex	11
GO:0031012	extracellular matrix	9
GO:0031225	anchored to membrane	209
GO:0031966	mitochondrial membrane	19
GO:0042651	thylakoid membrane	8
GO:0045271	respiratory chain complex I	19
GO:0045298	tubulin complex	10
GO:0048046	apoplast	92