[BiO BB] Is there a database available including all non-repetitive sequences of human genome

[Thomas Sicheritz-Ponten]

Chunlei Wu <reillywu at yahoo.com> writes:

> As title.
> I know the repetitive sequences in human genome can be
> masked by
> RepMasker. Did someone mask the entire human genome
> and make available
> the human genome sequnences without repetitive
> sequences?
> 

Check what ensembl provides: www.ensembl.org
Maybe you can find a description about how 
ftp://ftp.ensembl.org/pub/current/data/fasta/dna/ensembl-1.1.0_masked_golden_path.gz
has been masked.

good luck
-thomas

-- 
Sicheritz-Ponten Thomas, Ph.D  CBS, Department of Biotechnology
thomas at biopython.org           The Technical University of Denmark
CBS:  +45 45 252489            Building 208, DK-2800 Lyngby
Fax   +45 45 931585            http://www.cbs.dtu.dk/thomas

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