[BiO BB] Re: BiO_Bulletin_Board digest, Vol 1 #74 - 2 msgs

[Chunlei Wu]

Thanks,Thomas. 
      I found a page at
"http://www.ensembl.org/stats/" said file
"ensembl-1.1.0_masked_golden_path.gz" is "DNA database
(masked for repetitive sequences)". So I think that's
the data I needed. Thank you very much.

Newgene

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> Today's Topics:
> 
>   1. Is there a database available including all
> non-repetitive sequences of human genome (Chunlei
> Wu)
>   2. Re: Is there a database available including all
> non-repetitive sequences of human genome (Thomas
> Sicheritz-Ponten)
> 
> --__--__--
> 
> Message: 1
> Date: Tue, 21 Aug 2001 04:07:16 -0700 (PDT)
> From: Chunlei Wu <reillywu at yahoo.com>
> Subject: [BiO BB] Is there a database available
> including all non-repetitive sequences of human
> genome
> To: bio_bulletin_board at bioinformatics.org
> Reply-To: bio_bulletin_board at bioinformatics.org
> 
> As title.
> I know the repetitive sequences in human genome can
> be
> masked by
> RepMasker. Did someone mask the entire human genome
> and make available
> the human genome sequnences without repetitive
> sequences?
> 
> Thanks
> 
> Newgene
> 
> 
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> Message: 2
> To: bio_bulletin_board at bioinformatics.org
> Subject: Re: [BiO BB] Is there a database available
> including all non-repetitive sequences of human
> genome
> From: Thomas Sicheritz-Ponten <thomas at cbs.dtu.dk>
> Date: 21 Aug 2001 13:25:43 +0200
> Reply-To: bio_bulletin_board at bioinformatics.org
> 
> Chunlei Wu <reillywu at yahoo.com> writes:
> 
> > As title.
> > I know the repetitive sequences in human genome
> can be
> > masked by
> > RepMasker. Did someone mask the entire human
> genome
> > and make available
> > the human genome sequnences without repetitive
> > sequences?
> > 
> 
> Check what ensembl provides: www.ensembl.org
> Maybe you can find a description about how 
>
ftp://ftp.ensembl.org/pub/current/data/fasta/dna/ensembl-1.1.0_masked_golden_path.gz
> has been masked.
> 
> good luck
> -thomas
> 
> -- 
> Sicheritz-Ponten Thomas, Ph.D  CBS, Department of
> Biotechnology
> thomas at biopython.org           The Technical
> University of Denmark
> CBS:  +45 45 252489            Building 208, DK-2800
> Lyngby
> Fax   +45 45 931585           
> http://www.cbs.dtu.dk/thomas
> 
> 	De Chelonian Mobile ... The Turtle Moves ...
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> End of BiO_Bulletin_Board Digest


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