[BiO BB] Re: Re: [BiO BB] Domain recognition

balaji r balarji at rediffmail.com
Tue Oct 9 11:36:59 EDT 2001

you can use..prosite,emotif,....programs like this that exclusively are used to search the domains in a particular protein seqences..

On Tue, 09 Oct 2001 nabula easter wrote :
> hi, 
>  how easy is to find a domain in protein. 
> is there any protocol in identifying protein. i have a
> protein which is related to dolichyl -
> transferase,which do not have any domain , now when i
> do PSI-BLAST i find some other proteins which has some
> identical and similar areas ? does this mean that
> there is a domain in these proteins. 
>  would you please help me pointing any protocol to
> finalise any putative domain. IF i am looking at a
> novel domain how to validate that domain ?
>  please suggest any publications where the rules are
> mentioned 
> thank you 
> Easter
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