[BiO BB] Run server program remotely?

[Malcolm Cook]

if your programs take input on STDIN and output to STDOUT and STDERR, then
you can use rsh (look it up in your unix manual pages)



> -----Original Message-----
> From: bio_bulletin_board-admin at bioinformatics.org
> [mailto:bio_bulletin_board-admin at bioinformatics.org]On Behalf Of
> newgene at bigfoot.com
> Sent: Wednesday, June 05, 2002 9:17 AM
> To: bio_bulletin_board at bioinformatics.org
> Subject: Re: [BiO BB] Run server program remotely?
>
>
> It's good to show by an example:
> Supppose I can run "clustalw INFILE" on server terminal, is there a tool
> allowing me to run this command locally, just like I have clustalw
> installed locally? In the back, this tool will upload my local
> INFILE onto
> server and run "clustalw INFILE" on the server, and then send back the
> output to my local computer. The uploaded data file will be deleted from
> server after use.
>
> "Clustalw" here is just for example. Of course, I can install it on my
> local computer. But for those programs available only on server or those
> need strong server power, this tool (if exists) will give much
> convenience.
>
>
> Thanks.
>
> CL
>
>
>
> --- Bela Tiwari <btiwari at molbiol.ox.ac.uk> wrote:
>  > >popular sequence analysis programs like GCG
>  > package, etc. I can run those
>  > >tools from the terminal of server side. I am
>  > wondering if possible I can
>  > >run those programs remotely just like my local
>  > programs, but using server's
>  > >power. Thus, I don't need to upload my data files
>  > to server manually and
>  > >then run it from server terminal. I just need send
>  > the request to server,
>  > >then server will upload the needed local data file
>  > automatically and run
>  > >the program ,then send me back the result. Sort of
>  > a "local program simulator".
>  >
>  > Hello,
>  >
>  > I'm not sure this is exactly what you want, but
>  > have you looked at the Pise Bioperl modules?
>  >
>  > http://www-alt.pasteur.fr/~letondal/Pise/
>  >
>  > If you set up Pise on your server for your programs
>  > of interest, you could
>  > probably then use the Pise Bioperl modules to run
>  > these programs from your
>  > local machine.
>  >
>  >
>  > Cheers
>  >
>  > Bela
>  >
>  >
>  >
>  > .-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.
>  > Dr. Bela Tiwari
>  > Acting Manager
>  >
>  > OU Bioinformatics Centre
>  > SWD School of Pathology
>  > South Parks Road
>  > Oxford  OX1 3RE
>  > 01865 (2)75507
>  >
>  > http://www.molbiol.ox.ac.uk
>  > .-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.
>  >
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