[BiO BB] Parallel Blast

Jack da Silva jdasilva at ncsc.org
Mon Mar 18 08:56:36 EST 2002


How about sharing your possible solution with the rest of us?

Joe Landman wrote:
> 
> Rich:
> 
>   I will contact you off list.  I think we have something that might fit
> your needs.
> 
> Joe
> 
> On Fri, 2002-03-15 at 20:00, Rich Hickey wrote:
> > Question. Does anyone know of a parallized version of BLAST. Not threaded
> > or OpenMP. But a true MPI version? Or a combination of OpenMP/MPI. I'm
> > looking for something I can run on an IBM SP complex. The only versions I
> > can seem to find are all threaded. Which is great if I only want to use 4
> > CPU's at a time. But what I want to do is run 32 4 CPU machines at a
> > shot.  Thanks in advance for any help.
> >
> >
> > --
> > Rich Hickey
> > IBM Systems Analyst
> > Arctic Region Supercomputing Center
> > 910 Yukon Ave Suite 106
> > Fairbanks AK. 99775-6020
> > (907) 474-5151 hickey at arsc.edu
> >
> >
> > _______________________________________________
> > BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> > http://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 
> --
> Joseph Landman, Ph.D.
> Senior Scientist,
> MSC Software High Performance Computing
> email           : joe.landman at mscsoftware.com
> messaging       : page_joe at mschpc.dtw.macsch.com
> Main office     : +1 248 208 3312
> Cell phone      : +1 734 612 4615
> Fax             : +1 714 784 3774
> 
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
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-- 
Jack da Silva, PhD
Bioinformatics Project Leader
North Carolina Supercomputing Center

Bioinformatics: www.ncsc.org/academics/bio_web/
    NC BioGrid: www.ncbiogrid.org



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