[BiO BB] help regarding MEME program

Iddo Friedberg idoerg at burnham.org
Fri Dec 5 12:27:38 EST 2003


Hi,

Biopython provids a pretty generic way of generating log odd matrices. 
You'll need to download & install it from:

http://biopython.org

Take a look first at the documentation, see if that is what you are 
looking for:

http://biopython.org/docs/tutorial/Tutorial005.html#toc25

Cheers,

./I
Radhika Tallamraju wrote:
> Can anyone suggest me how to construct log odds matrix for a given
> consensus sequence. I need this to run MAST program.
> 
> Regards,
> Radhika.
> 
> 
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 
> 

-- 
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 646 3171
http://ffas.ljcrf.edu/~iddo




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