[BiO BB] Promoter Analysis

[Martin Gollery]

Hi Jan,
Download the Promoter database (EPD) to your local server, then run formatdb on 
it. This will allow you to do a local Batch BLAST search. Quite quickly too, as 
EPD is rather small.

Marty

Quoting Jan Torleif Pedersen <JATP at Lundbeck.com>:

> Greetings,
> 
> I hope not everybody is away on vacation !
> 
> We are running some custom spotted microarrays in our microbiology
> department and
> I would like to run a promoter analysis on all the genes on the chip. To
> that end I would need
> a promoter analysis program that I can run in batch-mode and a set of
> promoter patterns.
> 
> Could someone advice on the program and library of choice. 
> 
> 		Many Regards    -- Jan
> 
> Dr. Jan Torleif Pedersen
> Section head, Bioinformatics
> Department of Molecular Genetics
> H. Lundbeck A/S
> Ottiliavej 9, 2500 DK-Valby
> Denmark
> phone: +45 36 43 28 87
> FAX: 36438271
> email: jatp at lundbeck.com
> 
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
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> 


Martin Gollery
Associate Director of Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS200
(775)784-6048


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