[BiO BB] HMMER on genomes
Peri Suraj
bioinfo_india at yahoo.com
Mon Jul 28 07:45:39 EDT 2003
Hi Group,
Did any one tried to build HMMs (using HMMER) for any
gene class and then search genomes over this HMM.
Although this is more perfect for proteins, how one
can cope the problem of introns when you search
genomic DNA where you build and train HMM on mRNAs
(Exons). Can it be done. Unfortunately the makers of
HMMER are politely denying to respond to such specific
questions. Can any one please help.
Thanks
Suraj.
=====
Suraj Peri
Ph.D. Student
School of Medicine
Johns Hopkins University
600 North Wolfe Street
Baltimore, MD 21287
Phone:410-502-6665
E-mail: peri at jhmi.edu
__________________________________
Do you Yahoo!?
Yahoo! SiteBuilder - Free, easy-to-use web site design software
http://sitebuilder.yahoo.com
More information about the BBB
mailing list