[BiO BB] perl help
Joe Landman
landman at scalableinformatics.com
Sat Nov 15 19:47:16 EST 2003
Hi Matt:
On Sat, 2003-11-15 at 19:33, Matt McCormick wrote:
> Hi,
> I am trying to construct a sequence, with start position x and end
> position y, from A.thaliana chromosome 1. Does anyone have any code
> they would be willing to share that would do this? I have the current
> perl and bioperl modules installed. Thank you.
I might suggest giving a better specification of the problem. You
have the chromosome 1 data in some format, and you need to extract a
particular section from it? If this is the case, then is there a
particular reason why the substr function will not work?
my $small = substr $sequence,$x,$y-$x+1 ;
Joe
>
> -Matt McCormick
>
>
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--
Joe Landman
Scalable Informatics
email: landman at scalableinformatics.com
phone: +1 734 612 4615
web: http://scalableinformatics.com
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