[BiO BB] display DNA multiple alignements with gray levels

c.plessy at mangoosta.net c.plessy at mangoosta.net
Wed Apr 28 11:49:30 EDT 2004


	I am looking for a free program that would process DNA
multiple alignments, so that that conserved nucleotides would be on a
black background, moderately conserved on a grey background according
to the frequency of the most frequent nucleotide, and non conserved
nucleotides on a white background.

	Boxshade does that kind of thing, but uses gray for
similarity, which is not useful for DNA multiple alignments.

	Ideally, the output would be in eps, or something else
importable in Illustrator.

I would be mega happy If somebody knew such a tool.

Have a nice day,


CHARLES PLESSY, mailto:charles.plessy at ulp.u-strasbg.fr      \
IGBMC, B.P.10142, 67404 Illkirch Cedex, France             }(°>
Tel : (33) [0]388 65 33 38; Fax (33) [0]388 65 32 01        /

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