[BiO BB] Iterating over all the sequences in NR database

Chris Dwan cdwan at bioteam.net
Sat Dec 25 08:32:26 EST 2004


FASTA file:  				ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz
Formatted NCBI BLAST target:	ftp://ftp.ncbi.nih.gov/blast/db/nr.tar.gz

-Chris Dwan
  The BioTeam

On Dec 25, 2004, at 8:11 AM, <davidg at lsi.upc.edu> wrote:

> Hello.
> Is there any way to access every element of the nr database, iterating
> over all the sequences in that database? I thought about getting the
> nr database in a FASTA format text file which contained every protein
> in the nr database, but i haven't found it. And even if I did, i don't
> know if there's a better option.
> Thank you.
>
>
> --
> David García Cortés
> Instituto Nacional de Bioinformática (INB)
> Nodo Computacional GNHC-2 UPC-CIRI
> c/. Jordi Girona 1-3
> Modul C6-E201                   Tel.  : 934 011 650
> E-08034 Barcelona               Fax   : 934 017 014
> Catalunya (Spain)               e-mail: davidg at lsi.upc.edu
>
>
>
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