[BiO BB] Seqio and fmtseq
Stefanie Lager
stefanielager at fastmail.ca
Mon Feb 23 07:36:32 EST 2004
Thank you,
I really don't know much about compilation of c programs, so I don't
know what "-D__unix" means, and how it should be added?
Stefanie
> Did you add a
>
> -D__unix
>
> to the compile line?
>
> [landman at protein.scalableinformatics.com:~/seqio-1.2.2]
> 120 >./fmtseq
>
> Input: *none* (format: *auto*)
> Output: *stdout* (format: *none*)
> Deflts: -verbose -gapin=- -gapout=- -bigalign
> Options: -all
>
> Warning: An input file and output format must be specified.
>
> Commands (-option - set option, -no... - unset option, ? -help - list
> options,
> -r -run - execute, -q -quit - exit program, other - set input
> file)
> Enter:
>
> I can package up this directory and build an RPM out of it if there is
> interest.
>
> Joe
>
> On Mon, 2004-02-23 at 04:47, Stefanie Lager wrote:
>> Hi,
>>
>> I have problems to compile the Seqio library and specifically the
>> fmtseq sequence format conversion program, on Linux. It seems as if
>> line 150 in seqio.c and line 40 in fmtseq.c (extern char
>> *sys_errlist[]) is in conflict with stdio.h (gcc version 3.2.2). I've
>> tried to comment out these two lines, and then it compiles, but when
>> I try to run fmtseq it crashes with "Segmentation fault". Does anyone
>> know how to modify seqio.c and fmtseq.c, so they can be compiled on
>> Linux?
>>
>> Stefanie
>> _________________________________________________________________
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> --
> Joe Landman <landman at scalableinformatics.com>
>
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