[BiO BB] Java BLAST parser

Hongyu Zhang forward at hongyu.org
Tue Jul 6 20:37:35 EDT 2004

Dear all,

I am wondering whether anyone here has done some comparison between different
Java BLAST parsers, like BioJava (http://www.biojava.org/ ), BatchBLAST
(http://www.hip.harvard.edu/informatics/programs/JAVA%20BLAST%20Parser.html ).

I've used BioPerl during the past, but recently I have to use Java for a
project, so I would appreciate your input on which Java BLAST parsers to use
and how their performances are compared to BioPerl.


Hongyu Zhang, Ph.D.
Computational biologist
Ceres Inc.

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