[BiO BB] Java BLAST parser
Hongyu Zhang
forward at hongyu.org
Tue Jul 6 20:37:35 EDT 2004
Dear all,
I am wondering whether anyone here has done some comparison between different
Java BLAST parsers, like BioJava (http://www.biojava.org/ ), BatchBLAST
(http://www.hip.harvard.edu/informatics/programs/JAVA%20BLAST%20Parser.html ).
I've used BioPerl during the past, but recently I have to use Java for a
project, so I would appreciate your input on which Java BLAST parsers to use
and how their performances are compared to BioPerl.
Thanks,
--
Hongyu Zhang, Ph.D.
Computational biologist
Ceres Inc.
More information about the BBB
mailing list