[BiO BB] Ka/Ks

[Marcos de Carvalho]

Hi Peter,

On Sat, 26 Jun 2004 00:27:03 +0200, Peter Groenen <peter.groenen at home.nl> 
wrote:

> I am looking for a command line tool that can handle protein alignments 
> as input and aligns the corresponding transcripts. I want to use it for 
> Ka/Ks determination.


Try TRANALIGN from the EMBOSS package.

http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/tranalign.html

Cheers
Marcos