[BiO BB] parsing repeatmasker .tbl files

D. Norris dmnunif at charter.net
Sun Jun 27 11:54:42 EDT 2004


Sorry, we are not able to help you..

----- Original Message ----- 
From: "Matt McCormick" <mjmccorm at mtu.edu>
To: <bio_bulletin_board at bioinformatics.org>
Sent: Thursday, June 24, 2004 8:39 PM
Subject: [BiO BB] parsing repeatmasker .tbl files

> Hi,
> I've generated thousands of repeatmasker .tbl files.  I want to be able to
> extract certain table information(ie filename, total_length, number of
> retroelements, and length occupied).  Is there any bioperl documentation
> on doing this?  I've looked at the bioperl api for
> Bio::Tools::RepeatMasker but it wasn't much help to me.  Any suggestions?
> Thank you.
> -Matt McCormick
> Undergraduate in Bioinformatics
> Michigan Technological University
> http://www.bio.mtu.edu/~mjmccorm
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

More information about the BBB mailing list