[BiO BB] E.coli comparison

Tucker, James j.d.tucker at vla.defra.gsi.gov.uk
Thu May 6 04:01:48 EDT 2004

Hi Vijay, 
The Sanger centre - has ACT (Artemis Comparison Tool) available for Just
this kind of thing.
It is freely available and you can download it onto your PC/Mac.
It is very easy to use and gives you a visual output of the
similarities/differences in the genomes.
Hope this helps

Today's Topics:

   1. E.coli strain differences (Chandran Vijayendran)


Message: 1
From: "Chandran Vijayendran" <vijayendran_vijay at hotmail.com>
To: bio_bulletin_board at bioinformatics.org
Date: Wed, 05 May 2004 10:48:00 +0000
Subject: [BiO BB] E.coli strain differences
Reply-To: bio_bulletin_board at bioinformatics.org

Dear all,

I would like to compare the whole genome of two E.coli strains,
(K12-MG-1655 and K12 W3110).
Where MG strain genome is available at NCBI and W3110 strain genome is 
available at Genobase.
I would like to know gene arrangement differences in both the strain.
Is this data is already available on net?
If not how shall I proceed on?

Thanks for your time,


Chandran Vijayendran,
PhD Student,
Graduate school in Bioinformatics and Genome research.
c/o Prof. Erwin Flaschel,D5-120. Technical faculty,
University of Bielefeld,Universitaets str -25,D-33615,Bielefeld.

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