[BiO BB] GeneBank to SwissProt Mapping?

[Siddhartha Basu]

Hi,
I used to use the xref file from here to get a mapping between 
swissprot,refseq and locuslink ids.
ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN
Check out the file human.xrefs.gz.

It also do have the files for mouse and rat if go back one directory level.

Hope this help.

-siddhartha

Dan Bolser wrote:
> Thanks Pamela for your suggestions, I have tried LocusLink (the 'loc2acc'
> file) but I find many missing swissprot / trembl accession numbers. I
> fear that the GO mapping could be incomplete for other resons too. 
> 
> Thanks Svensson for the offer of assistance below, but I am not sure how
> having PID will help me. (sorry for my ignorance).
> 
> I know sptrembl has a good PIR mapping, can we get to PIR from GI?
> 
> I am running blast jobs at the minuite as the bind sequence file isn't too
> big, but getting accurate 1-1 mapping means that I have to blast against
> the full datasets and not some non redundant version thereof.
> 
> 4 more days to go...
> 
> If anyone wants the data let me know.
> 
> Dan.
>