[Bio BB] Implementation or software packages of suffix tree

[Marcos Oliveira de Carvalho]

Also:

http://www.techfak.uni-bielefeld.de/~kurtz/




> "Chia-Yu Su" wrote:
>>
>> Hi,
>>
>> I want to construct suffix trees to extract repeats from sequences.
>> I found several softwares from the web (by Dan Gusfield, Ting Chen, =
>> etc).
>> Has anyone used any recommended suffix tree software?
>> Are there any implementation or softwares of suffix trees which allows =
>> long sequence inputs and=20
>> generate results in linear time?
>> Please give me some suggestions about suffix tree software and where to  
>> =
>> download the web.
>
> You can look at:
> http://www-igm.univ-mlv.fr/~marsan/recherches.html
> and http://www-igm.univ-mlv.fr/~marsan/smile.html
>
>>
>> Thanks a lot for your help!
>>
>> Best regards,
>> Chia-Yu
>> ------------
>> Chia-Yu Su
>> Bioinformatics Program of=20
>> Taiwan International Graduate Program
>> Academia Sinica, Taiwan
>>
>> E-mail: cysu at iis.sinica.edu.tw
>> Phone: +886-2-27883799 ext. 2302
>> Fax: +886-2-27824814
>
> --
> Catherine Letondal -- Pasteur Institute Computing Center
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