[BiO BB] PAM vs BLOSUM
ryangolhar at hotmail.com
Sun Oct 3 21:26:05 EDT 2004
I started teaching a class and am explainin how PAM and BLOSUM matrices
are derived and how a log-odds matrix works.
I was wondering if anyone could recommend possible examples to use as
homework questions, or hands-on exercises for students to become aware
of the benefits and differences in the matrices.
I found a Matlab demo that compares the scores of alignments using
different matrices, but it doesn't go to the extent that I was hoping.
If you have any recommendations, I'd love to hear them. Thanks,
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