[BiO BB] Getting promotor region sequences of Yeast

[Ryan Golhar]

I've done something like this before.  I used the tool Spidey from NCBI
to determine exon locations, then used a perl script to parse that
information and grab 2500 bp upstream of the first exon.

-----
Ryan Golhar
Computational Biologist
The Informatics Institute at
The University of Medicine & Dentistry of NJ

Phone: 973-972-5034
Fax: 973-972-7412
Email: golharam at umdnj.edu

-----Original Message-----
From: bio_bulletin_board-admin at bioinformatics.org
[mailto:bio_bulletin_board-admin at bioinformatics.org] On Behalf Of Junguk
Hur
Sent: Friday, October 01, 2004 8:54 AM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] Getting promotor region sequences of Yeast



Dear all, 

I am trying to get intergenic sequences of yeast genes for promotor
analyses. 

I have a gene list of 7K but don't know how to get the upstream region
sequences. 

The gene list and relevant data was obtained from the following sites,
Professor Young's Lab, 

http://web.wi.mit.edu/young/location/

Does anybody have idea how to get thoes upstream region sequences?

Many thanks in advance, 

Junguk

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