[BiO BB] Getting promotor region sequences of Yeast

Ryan Golhar ryangolhar at hotmail.com
Tue Oct 12 19:09:33 EDT 2004

I've done something like this before.  I used the tool Spidey from NCBI
to determine exon locations, then used a perl script to parse that
information and grab 2500 bp upstream of the first exon.

Ryan Golhar
Computational Biologist
The Informatics Institute at
The University of Medicine & Dentistry of NJ

Phone: 973-972-5034
Fax: 973-972-7412
Email: golharam at umdnj.edu

-----Original Message-----
From: bio_bulletin_board-admin at bioinformatics.org
[mailto:bio_bulletin_board-admin at bioinformatics.org] On Behalf Of Junguk
Sent: Friday, October 01, 2004 8:54 AM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] Getting promotor region sequences of Yeast

Dear all, 

I am trying to get intergenic sequences of yeast genes for promotor

I have a gene list of 7K but don't know how to get the upstream region

The gene list and relevant data was obtained from the following sites,
Professor Young's Lab, 


Does anybody have idea how to get thoes upstream region sequences?

Many thanks in advance, 


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