[BiO BB] SWDA

[Etienne Noumen]

please.
excuse me for my last message in french, it was not meant for the list.
Thank you
etienne
----- Original Message ----- 
From: "Diego Martinez" <sariego9 at yahoo.com>
To: <bio_bulletin_board at bioinformatics.org>
Sent: Friday, September 17, 2004 10:44 AM
Subject: [BiO BB] SWDA


> Hello all,
> 
> I am searching for an implementation of the Smith-Waterman
> algorythm, but with the double-affine gapping that is
> publicly available.  I know FASTA has a full SW implementation,
> but it does not offer the second gap penalty score option.
> I also am aware that Paracel and DeCypher both have these,
> but they are far from free.  Any help would be
> appreciated.
> 
> Thanks.
> 
> Diego
> 
> 
> 
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