[BiO BB] SWDA
dmb at mrc-dunn.cam.ac.uk
Fri Sep 17 13:19:17 EDT 2004
On Fri, 17 Sep 2004, Martin Gollery wrote:
>I looked for this a couple of years ago whilst working on it for the
>DeCypher. There was nothing at the time, but this might have changed. I
>certainly like the double-affine scoring, so if there is no publicly
>available implementation, somebody ought to get to work on it!
Can it be done in perl?
I think such an implementation could be very usefull for teaching
>Diego Martinez wrote:
>> Hello all,
>> I am searching for an implementation of the Smith-Waterman
>> algorythm, but with the double-affine gapping that is
>> publicly available. I know FASTA has a full SW implementation,
>> but it does not offer the second gap penalty score option.
>> I also am aware that Paracel and DeCypher both have these,
>> but they are far from free. Any help would be
>> Do you Yahoo!?
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>> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
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