[BiO BB] Re: [Bioclusters] General question on time consuming problems
mike.fursov at gmail.com
Mon Apr 25 16:00:43 EDT 2005
We use GenomeBrowser (http://genome.unipro.ru). It is able to find,
visualize and store as sequence anotations both exact and not exact
patterns in DNA or its translations.
I wrote some opensource plugins for this tool: (http://genome.sf.net).
You can look for HMM signals using "HMM Seach" plugin by preparing
initial model from protein alignment.
On 4/26/05, Anney Che <chea at mail.nih.gov> wrote:
> Does anyone know if there is a program that will find a specific repeat in a
> DNA sequence and highly the repeats in the sequence?
> Similar to find function in MS Work but it will not find the pattern if the
> pattern is interrupted by a tab or newline (\n).
> Anney Che, M.S.
> Biocomputing Specialist
> Laboratory of Molecular Microbiology/NIAID
> 4 Center Drive, Room 301
> Bethesda, MD 20892
> 301-451-2851 (Office)
> 301-480-2716 (Fax)
> Bioinformatics.Org general forum - BiO_Bulletin_Board at bioinformatics.org
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