[BiO BB] paper
marty.gollery at gmail.com
Thu Aug 18 16:04:18 EDT 2005
Yes, they mean 'High Scoring Pairs', not 'High Speed Products'.
On 8/18/05, Marcos Oliveira de Carvalho <operon at cbiot.ufrgs.br> wrote:
> Dear all,
> Looking some papers about phylogenomic methods I found this reference:
> However, in the paragraph below, I was very confused:
> "More precisely, GBDP starts with an all-against-all pairwise
> comparison of genomes using BLASTN (Altschul et al., 1990).
> In a second step, a distance matrix is calculated from the
> resulting HSPs **(High Speed Products)**.
> Here, we studied a number of variants which are described in detail
> High Speed Products?
> I wonder they are not talking about "high score segment pairs" (HSSPs also
> abbreviated as HSPs).
> Bioinformatics.Org general forum - BiO_Bulletin_Board at bioinformatics.org
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
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